Gene : Medtr1g058880 M. truncatula Mt4.0v1
Defline:  (1 of 603) PF07127 - Late nodulin protein (Nodulin_late) Description:  Nodule Cysteine-Rich (NCR) secreted peptide
Genomic Order:  2751 Name:  ? Medtr1g058880
Secondary Identifier:  ? PAC:31099834
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g058880 0.5kb upstream 0.5kb upstream 772 true chr1: 21850005-21850776 Medicago truncatula
Medtr1g058880 0.5kb upstream 0.5kb upstream 500 false chr1: 21850005-21850504 Medicago truncatula
Medtr1g058880 0.5kb downstream 0.5kb downstream 772 true chr1: 21850505-21851276 Medicago truncatula
Medtr1g058880 0.5kb downstream 0.5kb downstream 500 false chr1: 21850777-21851276 Medicago truncatula
Medtr1g058880 1.0kb upstream 1.0kb upstream 1272 true chr1: 21849505-21850776 Medicago truncatula
Medtr1g058880 1.0kb upstream 1.0kb upstream 1000 false chr1: 21849505-21850504 Medicago truncatula
Medtr1g058880 1.0kb downstream 1.0kb downstream 1272 true chr1: 21850505-21851776 Medicago truncatula
Medtr1g058880 1.0kb downstream 1.0kb downstream 1000 false chr1: 21850777-21851776 Medicago truncatula
Medtr1g058880 2.0kb upstream 2.0kb upstream 2272 true chr1: 21848505-21850776 Medicago truncatula
Medtr1g058880 2.0kb upstream 2.0kb upstream 2000 false chr1: 21848505-21850504 Medicago truncatula
Medtr1g058880 2.0kb downstream 2.0kb downstream 2272 true chr1: 21850505-21852776 Medicago truncatula
Medtr1g058880 2.0kb downstream 2.0kb downstream 2000 false chr1: 21850777-21852776 Medicago truncatula
Medtr1g058880 5.0kb upstream 5.0kb upstream 5272 true chr1: 21845505-21850776 Medicago truncatula
Medtr1g058880 5.0kb upstream 5.0kb upstream 5000 false chr1: 21845505-21850504 Medicago truncatula
Medtr1g058880 5.0kb downstream 5.0kb downstream 5272 true chr1: 21850505-21855776 Medicago truncatula
Medtr1g058880 5.0kb downstream 5.0kb downstream 5000 false chr1: 21850777-21855776 Medicago truncatula
Medtr1g058880 10.0kb upstream 10.0kb upstream 10272 true chr1: 21840505-21850776 Medicago truncatula
Medtr1g058880 10.0kb upstream 10.0kb upstream 10000 false chr1: 21840505-21850504 Medicago truncatula
Medtr1g058880 10.0kb downstream 10.0kb downstream 10272 true chr1: 21850505-21860776 Medicago truncatula
Medtr1g058880 10.0kb downstream 10.0kb downstream 10000 false chr1: 21850777-21860776 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121619810 5273 Angiosperm Singleton cluster - no MSA
122257191 5265 Fabidae Singleton cluster - no MSA
123998763 5270 Rosid Singleton cluster - no MSA
123573041 5271 Pentapetalae Singleton cluster - no MSA
122607763 5272 Eudicot Singleton cluster - no MSA
120891914 5274 Embryophyte Singleton cluster - no MSA
122932569 5275 Viridiplantae Singleton cluster - no MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 35.69     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain