Gene : Medtr1g059280 M. truncatula Mt4.0v1
Defline:  (1 of 67) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Description:  pentatricopeptide (PPR) repeat protein
Genomic Order:  2725 Name:  ? Medtr1g059280
Secondary Identifier:  ? PAC:31094829
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g059280 0.5kb upstream 0.5kb upstream 3643 true chr1: 21515328-21518970 Medicago truncatula
Medtr1g059280 0.5kb upstream 0.5kb upstream 500 false chr1: 21515328-21515827 Medicago truncatula
Medtr1g059280 0.5kb downstream 0.5kb downstream 3643 true chr1: 21515828-21519470 Medicago truncatula
Medtr1g059280 0.5kb downstream 0.5kb downstream 500 false chr1: 21518971-21519470 Medicago truncatula
Medtr1g059280 1.0kb upstream 1.0kb upstream 4143 true chr1: 21514828-21518970 Medicago truncatula
Medtr1g059280 1.0kb upstream 1.0kb upstream 1000 false chr1: 21514828-21515827 Medicago truncatula
Medtr1g059280 1.0kb downstream 1.0kb downstream 4143 true chr1: 21515828-21519970 Medicago truncatula
Medtr1g059280 1.0kb downstream 1.0kb downstream 1000 false chr1: 21518971-21519970 Medicago truncatula
Medtr1g059280 2.0kb upstream 2.0kb upstream 5143 true chr1: 21513828-21518970 Medicago truncatula
Medtr1g059280 2.0kb upstream 2.0kb upstream 2000 false chr1: 21513828-21515827 Medicago truncatula
Medtr1g059280 2.0kb downstream 2.0kb downstream 5143 true chr1: 21515828-21520970 Medicago truncatula
Medtr1g059280 2.0kb downstream 2.0kb downstream 2000 false chr1: 21518971-21520970 Medicago truncatula
Medtr1g059280 5.0kb upstream 5.0kb upstream 8143 true chr1: 21510828-21518970 Medicago truncatula
Medtr1g059280 5.0kb upstream 5.0kb upstream 5000 false chr1: 21510828-21515827 Medicago truncatula
Medtr1g059280 5.0kb downstream 5.0kb downstream 8143 true chr1: 21515828-21523970 Medicago truncatula
Medtr1g059280 5.0kb downstream 5.0kb downstream 5000 false chr1: 21518971-21523970 Medicago truncatula
Medtr1g059280 10.0kb upstream 10.0kb upstream 13143 true chr1: 21505828-21518970 Medicago truncatula
Medtr1g059280 10.0kb upstream 10.0kb upstream 10000 false chr1: 21505828-21515827 Medicago truncatula
Medtr1g059280 10.0kb downstream 10.0kb downstream 13143 true chr1: 21515828-21528970 Medicago truncatula
Medtr1g059280 10.0kb downstream 10.0kb downstream 10000 false chr1: 21518971-21528970 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027491 5273 Angiosperm View MSA
122307035 5265 Fabidae View MSA
124074788 5270 Rosid View MSA
123753025 5271 Pentapetalae View MSA
122794671 5272 Eudicot View MSA
121352423 5274 Embryophyte View MSA
123382766 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.233        
cufflinks 0.081        
cufflinks 0.226        
cufflinks 0.016     Low Low
cufflinks 0.29       High
cufflinks 0.143        
cufflinks 0.138        
cufflinks 0.129        
cufflinks 0.031     Low Low

0 Strain