Gene : Medtr1g060580 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR15052:SF2 - GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 2 Description:  transducin/WD40 repeat protein
Genomic Order:  3203 Name:  ? Medtr1g060580
Secondary Identifier:  ? PAC:31096420
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g060580 0.5kb upstream 0.5kb upstream 12640 true chr1: 26357422-26370061 Medicago truncatula
Medtr1g060580 0.5kb upstream 0.5kb upstream 500 false chr1: 26357422-26357921 Medicago truncatula
Medtr1g060580 0.5kb downstream 0.5kb downstream 12640 true chr1: 26357922-26370561 Medicago truncatula
Medtr1g060580 0.5kb downstream 0.5kb downstream 500 false chr1: 26370062-26370561 Medicago truncatula
Medtr1g060580 1.0kb upstream 1.0kb upstream 13140 true chr1: 26356922-26370061 Medicago truncatula
Medtr1g060580 1.0kb upstream 1.0kb upstream 1000 false chr1: 26356922-26357921 Medicago truncatula
Medtr1g060580 1.0kb downstream 1.0kb downstream 13140 true chr1: 26357922-26371061 Medicago truncatula
Medtr1g060580 1.0kb downstream 1.0kb downstream 1000 false chr1: 26370062-26371061 Medicago truncatula
Medtr1g060580 2.0kb upstream 2.0kb upstream 14140 true chr1: 26355922-26370061 Medicago truncatula
Medtr1g060580 2.0kb upstream 2.0kb upstream 2000 false chr1: 26355922-26357921 Medicago truncatula
Medtr1g060580 2.0kb downstream 2.0kb downstream 14140 true chr1: 26357922-26372061 Medicago truncatula
Medtr1g060580 2.0kb downstream 2.0kb downstream 2000 false chr1: 26370062-26372061 Medicago truncatula
Medtr1g060580 5.0kb upstream 5.0kb upstream 17140 true chr1: 26352922-26370061 Medicago truncatula
Medtr1g060580 5.0kb upstream 5.0kb upstream 5000 false chr1: 26352922-26357921 Medicago truncatula
Medtr1g060580 5.0kb downstream 5.0kb downstream 17140 true chr1: 26357922-26375061 Medicago truncatula
Medtr1g060580 5.0kb downstream 5.0kb downstream 5000 false chr1: 26370062-26375061 Medicago truncatula
Medtr1g060580 10.0kb upstream 10.0kb upstream 22140 true chr1: 26347922-26370061 Medicago truncatula
Medtr1g060580 10.0kb upstream 10.0kb upstream 10000 false chr1: 26347922-26357921 Medicago truncatula
Medtr1g060580 10.0kb downstream 10.0kb downstream 22140 true chr1: 26357922-26380061 Medicago truncatula
Medtr1g060580 10.0kb downstream 10.0kb downstream 10000 false chr1: 26370062-26380061 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026858 5273 Angiosperm View MSA
122310918 5265 Fabidae View MSA
124063805 5270 Rosid View MSA
123737128 5271 Pentapetalae View MSA
122794531 5272 Eudicot View MSA
121347438 5274 Embryophyte View MSA
123380552 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.369       High
cufflinks 3.023        
cufflinks 3.073        
cufflinks 0.895       Low
cufflinks 3.012        
cufflinks 1.388       Low
cufflinks 3.063        
cufflinks 2.662        
cufflinks 1.551        

0 Strain