Gene : Medtr1g050425 M. truncatula Mt4.0v1
Defline:  (1 of 3) 2.7.8.7 - Holo-[acyl-carrier-protein] synthase / PPTase Description:  4'-phosphopantetheinyl transferase family protein
Genomic Order:  2507 Name:  ? Medtr1g050425
Secondary Identifier:  ? PAC:31093847
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6012-1 Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g050425 0.5kb upstream 0.5kb upstream 3820 true chr1: 19382271-19386090 Medicago truncatula
Medtr1g050425 0.5kb upstream 0.5kb upstream 500 false chr1: 19382271-19382770 Medicago truncatula
Medtr1g050425 0.5kb downstream 0.5kb downstream 3820 true chr1: 19382771-19386590 Medicago truncatula
Medtr1g050425 0.5kb downstream 0.5kb downstream 500 false chr1: 19386091-19386590 Medicago truncatula
Medtr1g050425 1.0kb upstream 1.0kb upstream 4320 true chr1: 19381771-19386090 Medicago truncatula
Medtr1g050425 1.0kb upstream 1.0kb upstream 1000 false chr1: 19381771-19382770 Medicago truncatula
Medtr1g050425 1.0kb downstream 1.0kb downstream 4320 true chr1: 19382771-19387090 Medicago truncatula
Medtr1g050425 1.0kb downstream 1.0kb downstream 1000 false chr1: 19386091-19387090 Medicago truncatula
Medtr1g050425 2.0kb upstream 2.0kb upstream 5320 true chr1: 19380771-19386090 Medicago truncatula
Medtr1g050425 2.0kb upstream 2.0kb upstream 2000 false chr1: 19380771-19382770 Medicago truncatula
Medtr1g050425 2.0kb downstream 2.0kb downstream 5320 true chr1: 19382771-19388090 Medicago truncatula
Medtr1g050425 2.0kb downstream 2.0kb downstream 2000 false chr1: 19386091-19388090 Medicago truncatula
Medtr1g050425 5.0kb upstream 5.0kb upstream 8320 true chr1: 19377771-19386090 Medicago truncatula
Medtr1g050425 5.0kb upstream 5.0kb upstream 5000 false chr1: 19377771-19382770 Medicago truncatula
Medtr1g050425 5.0kb downstream 5.0kb downstream 8320 true chr1: 19382771-19391090 Medicago truncatula
Medtr1g050425 5.0kb downstream 5.0kb downstream 5000 false chr1: 19386091-19391090 Medicago truncatula
Medtr1g050425 10.0kb upstream 10.0kb upstream 13320 true chr1: 19372771-19386090 Medicago truncatula
Medtr1g050425 10.0kb upstream 10.0kb upstream 10000 false chr1: 19372771-19382770 Medicago truncatula
Medtr1g050425 10.0kb downstream 10.0kb downstream 13320 true chr1: 19382771-19396090 Medicago truncatula
Medtr1g050425 10.0kb downstream 10.0kb downstream 10000 false chr1: 19386091-19396090 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307205 5265 Fabidae View MSA
124070167 5270 Rosid View MSA
123742618 5271 Pentapetalae View MSA
122794385 5272 Eudicot View MSA
122048448 5273 Angiosperm View MSA
123429078 5275 Viridiplantae View MSA
121348212 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.428       Low
cufflinks 0.786        
cufflinks 1.043       High
cufflinks 0.381       Low
cufflinks 0.842        
cufflinks 0.735        
cufflinks 0.92        
cufflinks 0.907        
cufflinks 0.653        

0 Strain