Gene : Medtr1g050535 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR10742:SF260 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 Description:  lysine-specific histone demethylase-like protein
Genomic Order:  2534 Name:  ? Medtr1g050535
Secondary Identifier:  ? PAC:31100587
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6441 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g050535 0.5kb upstream 0.5kb upstream 5768 true chr1: 19553887-19559654 Medicago truncatula
Medtr1g050535 0.5kb upstream 0.5kb upstream 500 false chr1: 19553887-19554386 Medicago truncatula
Medtr1g050535 0.5kb downstream 0.5kb downstream 5768 true chr1: 19554387-19560154 Medicago truncatula
Medtr1g050535 0.5kb downstream 0.5kb downstream 500 false chr1: 19559655-19560154 Medicago truncatula
Medtr1g050535 1.0kb upstream 1.0kb upstream 6268 true chr1: 19553387-19559654 Medicago truncatula
Medtr1g050535 1.0kb upstream 1.0kb upstream 1000 false chr1: 19553387-19554386 Medicago truncatula
Medtr1g050535 1.0kb downstream 1.0kb downstream 6268 true chr1: 19554387-19560654 Medicago truncatula
Medtr1g050535 1.0kb downstream 1.0kb downstream 1000 false chr1: 19559655-19560654 Medicago truncatula
Medtr1g050535 2.0kb upstream 2.0kb upstream 7268 true chr1: 19552387-19559654 Medicago truncatula
Medtr1g050535 2.0kb upstream 2.0kb upstream 2000 false chr1: 19552387-19554386 Medicago truncatula
Medtr1g050535 2.0kb downstream 2.0kb downstream 7268 true chr1: 19554387-19561654 Medicago truncatula
Medtr1g050535 2.0kb downstream 2.0kb downstream 2000 false chr1: 19559655-19561654 Medicago truncatula
Medtr1g050535 5.0kb upstream 5.0kb upstream 10268 true chr1: 19549387-19559654 Medicago truncatula
Medtr1g050535 5.0kb upstream 5.0kb upstream 5000 false chr1: 19549387-19554386 Medicago truncatula
Medtr1g050535 5.0kb downstream 5.0kb downstream 10268 true chr1: 19554387-19564654 Medicago truncatula
Medtr1g050535 5.0kb downstream 5.0kb downstream 5000 false chr1: 19559655-19564654 Medicago truncatula
Medtr1g050535 10.0kb upstream 10.0kb upstream 15268 true chr1: 19544387-19559654 Medicago truncatula
Medtr1g050535 10.0kb upstream 10.0kb upstream 10000 false chr1: 19544387-19554386 Medicago truncatula
Medtr1g050535 10.0kb downstream 10.0kb downstream 15268 true chr1: 19554387-19569654 Medicago truncatula
Medtr1g050535 10.0kb downstream 10.0kb downstream 10000 false chr1: 19559655-19569654 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300122 5265 Fabidae View MSA
124068541 5270 Rosid View MSA
123736657 5271 Pentapetalae View MSA
122791898 5272 Eudicot View MSA
122046966 5273 Angiosperm View MSA
121350960 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.11        
cufflinks 2.167        
cufflinks 3.002       High
cufflinks 0.852       Low
cufflinks 2.658        
cufflinks 0.603       Low
cufflinks 1.644        
cufflinks 2.283        
cufflinks 0.982        

0 Strain