Gene : Medtr1g051105 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR22763:SF44 - E3 UBIQUITIN LIGASE Description:  zinc finger, C3HC4 type (RING finger) protein
Genomic Order:  2579 Name:  ? Medtr1g051105
Secondary Identifier:  ? PAC:31096920
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7511 Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g051105 0.5kb upstream 0.5kb upstream 3461 true chr1: 19919998-19923458 Medicago truncatula
Medtr1g051105 0.5kb upstream 0.5kb upstream 500 false chr1: 19922959-19923458 Medicago truncatula
Medtr1g051105 0.5kb downstream 0.5kb downstream 3461 true chr1: 19919498-19922958 Medicago truncatula
Medtr1g051105 0.5kb downstream 0.5kb downstream 500 false chr1: 19919498-19919997 Medicago truncatula
Medtr1g051105 1.0kb upstream 1.0kb upstream 3961 true chr1: 19919998-19923958 Medicago truncatula
Medtr1g051105 1.0kb upstream 1.0kb upstream 1000 false chr1: 19922959-19923958 Medicago truncatula
Medtr1g051105 1.0kb downstream 1.0kb downstream 3961 true chr1: 19918998-19922958 Medicago truncatula
Medtr1g051105 1.0kb downstream 1.0kb downstream 1000 false chr1: 19918998-19919997 Medicago truncatula
Medtr1g051105 2.0kb upstream 2.0kb upstream 4961 true chr1: 19919998-19924958 Medicago truncatula
Medtr1g051105 2.0kb upstream 2.0kb upstream 2000 false chr1: 19922959-19924958 Medicago truncatula
Medtr1g051105 2.0kb downstream 2.0kb downstream 4961 true chr1: 19917998-19922958 Medicago truncatula
Medtr1g051105 2.0kb downstream 2.0kb downstream 2000 false chr1: 19917998-19919997 Medicago truncatula
Medtr1g051105 5.0kb upstream 5.0kb upstream 7961 true chr1: 19919998-19927958 Medicago truncatula
Medtr1g051105 5.0kb upstream 5.0kb upstream 5000 false chr1: 19922959-19927958 Medicago truncatula
Medtr1g051105 5.0kb downstream 5.0kb downstream 7961 true chr1: 19914998-19922958 Medicago truncatula
Medtr1g051105 5.0kb downstream 5.0kb downstream 5000 false chr1: 19914998-19919997 Medicago truncatula
Medtr1g051105 10.0kb upstream 10.0kb upstream 12961 true chr1: 19919998-19932958 Medicago truncatula
Medtr1g051105 10.0kb upstream 10.0kb upstream 10000 false chr1: 19922959-19932958 Medicago truncatula
Medtr1g051105 10.0kb downstream 10.0kb downstream 12961 true chr1: 19909998-19922958 Medicago truncatula
Medtr1g051105 10.0kb downstream 10.0kb downstream 10000 false chr1: 19909998-19919997 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311053 5265 Fabidae View MSA
124070952 5270 Rosid View MSA
123745999 5271 Pentapetalae View MSA
122790564 5272 Eudicot View MSA
122048435 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.089       High
cufflinks 3.056        
cufflinks 4.101        
cufflinks 2.78        
cufflinks 3.995        
cufflinks 0.795       Low
cufflinks 4.719        
cufflinks 3.579        
cufflinks 3.854        

0 Strain