Gene : Medtr1g053640 M. truncatula Mt4.0v1
Defline:  (1 of 603) PF07127 - Late nodulin protein (Nodulin_late) Description:  Nodule Cysteine-Rich (NCR) secreted peptide
Genomic Order:  2820 Name:  ? Medtr1g053640
Secondary Identifier:  ? PAC:31094950
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g053640 0.5kb upstream 0.5kb upstream 892 true chr1: 22636728-22637619 Medicago truncatula
Medtr1g053640 0.5kb upstream 0.5kb upstream 500 false chr1: 22637120-22637619 Medicago truncatula
Medtr1g053640 0.5kb downstream 0.5kb downstream 892 true chr1: 22636228-22637119 Medicago truncatula
Medtr1g053640 0.5kb downstream 0.5kb downstream 500 false chr1: 22636228-22636727 Medicago truncatula
Medtr1g053640 1.0kb upstream 1.0kb upstream 1392 true chr1: 22636728-22638119 Medicago truncatula
Medtr1g053640 1.0kb upstream 1.0kb upstream 1000 false chr1: 22637120-22638119 Medicago truncatula
Medtr1g053640 1.0kb downstream 1.0kb downstream 1392 true chr1: 22635728-22637119 Medicago truncatula
Medtr1g053640 1.0kb downstream 1.0kb downstream 1000 false chr1: 22635728-22636727 Medicago truncatula
Medtr1g053640 2.0kb upstream 2.0kb upstream 2392 true chr1: 22636728-22639119 Medicago truncatula
Medtr1g053640 2.0kb upstream 2.0kb upstream 2000 false chr1: 22637120-22639119 Medicago truncatula
Medtr1g053640 2.0kb downstream 2.0kb downstream 2392 true chr1: 22634728-22637119 Medicago truncatula
Medtr1g053640 2.0kb downstream 2.0kb downstream 2000 false chr1: 22634728-22636727 Medicago truncatula
Medtr1g053640 5.0kb upstream 5.0kb upstream 5392 true chr1: 22636728-22642119 Medicago truncatula
Medtr1g053640 5.0kb upstream 5.0kb upstream 5000 false chr1: 22637120-22642119 Medicago truncatula
Medtr1g053640 5.0kb downstream 5.0kb downstream 5392 true chr1: 22631728-22637119 Medicago truncatula
Medtr1g053640 5.0kb downstream 5.0kb downstream 5000 false chr1: 22631728-22636727 Medicago truncatula
Medtr1g053640 10.0kb upstream 10.0kb upstream 10392 true chr1: 22636728-22647119 Medicago truncatula
Medtr1g053640 10.0kb upstream 10.0kb upstream 10000 false chr1: 22637120-22647119 Medicago truncatula
Medtr1g053640 10.0kb downstream 10.0kb downstream 10392 true chr1: 22626728-22637119 Medicago truncatula
Medtr1g053640 10.0kb downstream 10.0kb downstream 10000 false chr1: 22626728-22636727 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121618787 5273 Angiosperm Singleton cluster - no MSA
122256064 5265 Fabidae Singleton cluster - no MSA
123997709 5270 Rosid Singleton cluster - no MSA
123572016 5271 Pentapetalae Singleton cluster - no MSA
122606739 5272 Eudicot Singleton cluster - no MSA
120890891 5274 Embryophyte Singleton cluster - no MSA
122931546 5275 Viridiplantae Singleton cluster - no MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 42.193     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain