Gene : Medtr1g068830 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR23163:SF0 - E3 UBIQUITIN-PROTEIN LIGASE BRE1 Description:  E3 ubiquitin-protein ligase BRE1-like protein
Genomic Order:  3537 Name:  ? Medtr1g068830
Secondary Identifier:  ? PAC:31096910
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7511 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g068830 0.5kb upstream 0.5kb upstream 14080 true chr1: 29402918-29416997 Medicago truncatula
Medtr1g068830 0.5kb upstream 0.5kb upstream 500 false chr1: 29416498-29416997 Medicago truncatula
Medtr1g068830 0.5kb downstream 0.5kb downstream 14080 true chr1: 29402418-29416497 Medicago truncatula
Medtr1g068830 0.5kb downstream 0.5kb downstream 500 false chr1: 29402418-29402917 Medicago truncatula
Medtr1g068830 1.0kb upstream 1.0kb upstream 14580 true chr1: 29402918-29417497 Medicago truncatula
Medtr1g068830 1.0kb upstream 1.0kb upstream 1000 false chr1: 29416498-29417497 Medicago truncatula
Medtr1g068830 1.0kb downstream 1.0kb downstream 14580 true chr1: 29401918-29416497 Medicago truncatula
Medtr1g068830 1.0kb downstream 1.0kb downstream 1000 false chr1: 29401918-29402917 Medicago truncatula
Medtr1g068830 2.0kb upstream 2.0kb upstream 15580 true chr1: 29402918-29418497 Medicago truncatula
Medtr1g068830 2.0kb upstream 2.0kb upstream 2000 false chr1: 29416498-29418497 Medicago truncatula
Medtr1g068830 2.0kb downstream 2.0kb downstream 15580 true chr1: 29400918-29416497 Medicago truncatula
Medtr1g068830 2.0kb downstream 2.0kb downstream 2000 false chr1: 29400918-29402917 Medicago truncatula
Medtr1g068830 5.0kb upstream 5.0kb upstream 18580 true chr1: 29402918-29421497 Medicago truncatula
Medtr1g068830 5.0kb upstream 5.0kb upstream 5000 false chr1: 29416498-29421497 Medicago truncatula
Medtr1g068830 5.0kb downstream 5.0kb downstream 18580 true chr1: 29397918-29416497 Medicago truncatula
Medtr1g068830 5.0kb downstream 5.0kb downstream 5000 false chr1: 29397918-29402917 Medicago truncatula
Medtr1g068830 10.0kb upstream 10.0kb upstream 23580 true chr1: 29402918-29426497 Medicago truncatula
Medtr1g068830 10.0kb upstream 10.0kb upstream 10000 false chr1: 29416498-29426497 Medicago truncatula
Medtr1g068830 10.0kb downstream 10.0kb downstream 23580 true chr1: 29392918-29416497 Medicago truncatula
Medtr1g068830 10.0kb downstream 10.0kb downstream 10000 false chr1: 29392918-29402917 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307640 5265 Fabidae View MSA
124068574 5270 Rosid View MSA
123753299 5271 Pentapetalae View MSA
122793673 5272 Eudicot View MSA
122042098 5273 Angiosperm View MSA
121349326 5274 Embryophyte View MSA
123423997 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.615        
cufflinks 0.619        
cufflinks 1.009       High
cufflinks 0.171       Low
cufflinks 0.762        
cufflinks 0.423        
cufflinks 0.452        
cufflinks 0.627        
cufflinks 0.466        

0 Strain