Gene : Medtr1g054035 M. truncatula Mt4.0v1
Defline:  (1 of 2) 1.14.19.6 - Delta(12)-fatty-acid desaturase / Oleoyl-CoA Delta(12) desaturase Description:  microsomal omega-3 fatty acid desaturase
Genomic Order:  2845 Name:  ? Medtr1g054035
Secondary Identifier:  ? PAC:31096356
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5995 Medicago truncatula pathologic  
Mtruncatula PWY-762 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g054035 0.5kb upstream 0.5kb upstream 3402 true chr1: 23028556-23031957 Medicago truncatula
Medtr1g054035 0.5kb upstream 0.5kb upstream 500 false chr1: 23028556-23029055 Medicago truncatula
Medtr1g054035 0.5kb downstream 0.5kb downstream 3402 true chr1: 23029056-23032457 Medicago truncatula
Medtr1g054035 0.5kb downstream 0.5kb downstream 500 false chr1: 23031958-23032457 Medicago truncatula
Medtr1g054035 1.0kb upstream 1.0kb upstream 3902 true chr1: 23028056-23031957 Medicago truncatula
Medtr1g054035 1.0kb upstream 1.0kb upstream 1000 false chr1: 23028056-23029055 Medicago truncatula
Medtr1g054035 1.0kb downstream 1.0kb downstream 3902 true chr1: 23029056-23032957 Medicago truncatula
Medtr1g054035 1.0kb downstream 1.0kb downstream 1000 false chr1: 23031958-23032957 Medicago truncatula
Medtr1g054035 2.0kb upstream 2.0kb upstream 4902 true chr1: 23027056-23031957 Medicago truncatula
Medtr1g054035 2.0kb upstream 2.0kb upstream 2000 false chr1: 23027056-23029055 Medicago truncatula
Medtr1g054035 2.0kb downstream 2.0kb downstream 4902 true chr1: 23029056-23033957 Medicago truncatula
Medtr1g054035 2.0kb downstream 2.0kb downstream 2000 false chr1: 23031958-23033957 Medicago truncatula
Medtr1g054035 5.0kb upstream 5.0kb upstream 7902 true chr1: 23024056-23031957 Medicago truncatula
Medtr1g054035 5.0kb upstream 5.0kb upstream 5000 false chr1: 23024056-23029055 Medicago truncatula
Medtr1g054035 5.0kb downstream 5.0kb downstream 7902 true chr1: 23029056-23036957 Medicago truncatula
Medtr1g054035 5.0kb downstream 5.0kb downstream 5000 false chr1: 23031958-23036957 Medicago truncatula
Medtr1g054035 10.0kb upstream 10.0kb upstream 12902 true chr1: 23019056-23031957 Medicago truncatula
Medtr1g054035 10.0kb upstream 10.0kb upstream 10000 false chr1: 23019056-23029055 Medicago truncatula
Medtr1g054035 10.0kb downstream 10.0kb downstream 12902 true chr1: 23029056-23041957 Medicago truncatula
Medtr1g054035 10.0kb downstream 10.0kb downstream 10000 false chr1: 23031958-23041957 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041215 5273 Angiosperm View MSA
122294925 5265 Fabidae View MSA
124074119 5270 Rosid View MSA
123747966 5271 Pentapetalae View MSA
122789327 5272 Eudicot View MSA
121347269 5274 Embryophyte View MSA
123426688 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.339        
cufflinks 3.799        
cufflinks 0.165       Low
cufflinks 4.594        
cufflinks 0.86        
cufflinks 0.211       Low
cufflinks 3.598        
cufflinks 1.162        
cufflinks 5.652       High

0 Strain