Gene : Medtr1g053970 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR33493:SF2 - LATE EMBRYOGENESIS ABUNDANT PROTEIN 4-5 Description:  seed maturation protein
Genomic Order:  2843 Name:  ? Medtr1g053970
Secondary Identifier:  ? PAC:31093419
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g053970 0.5kb upstream 0.5kb upstream 1714 true chr1: 22952779-22954492 Medicago truncatula
Medtr1g053970 0.5kb upstream 0.5kb upstream 500 false chr1: 22953993-22954492 Medicago truncatula
Medtr1g053970 0.5kb downstream 0.5kb downstream 1714 true chr1: 22952279-22953992 Medicago truncatula
Medtr1g053970 0.5kb downstream 0.5kb downstream 500 false chr1: 22952279-22952778 Medicago truncatula
Medtr1g053970 1.0kb upstream 1.0kb upstream 2214 true chr1: 22952779-22954992 Medicago truncatula
Medtr1g053970 1.0kb upstream 1.0kb upstream 1000 false chr1: 22953993-22954992 Medicago truncatula
Medtr1g053970 1.0kb downstream 1.0kb downstream 2214 true chr1: 22951779-22953992 Medicago truncatula
Medtr1g053970 1.0kb downstream 1.0kb downstream 1000 false chr1: 22951779-22952778 Medicago truncatula
Medtr1g053970 2.0kb upstream 2.0kb upstream 3214 true chr1: 22952779-22955992 Medicago truncatula
Medtr1g053970 2.0kb upstream 2.0kb upstream 2000 false chr1: 22953993-22955992 Medicago truncatula
Medtr1g053970 2.0kb downstream 2.0kb downstream 3214 true chr1: 22950779-22953992 Medicago truncatula
Medtr1g053970 2.0kb downstream 2.0kb downstream 2000 false chr1: 22950779-22952778 Medicago truncatula
Medtr1g053970 5.0kb upstream 5.0kb upstream 6214 true chr1: 22952779-22958992 Medicago truncatula
Medtr1g053970 5.0kb upstream 5.0kb upstream 5000 false chr1: 22953993-22958992 Medicago truncatula
Medtr1g053970 5.0kb downstream 5.0kb downstream 6214 true chr1: 22947779-22953992 Medicago truncatula
Medtr1g053970 5.0kb downstream 5.0kb downstream 5000 false chr1: 22947779-22952778 Medicago truncatula
Medtr1g053970 10.0kb upstream 10.0kb upstream 11214 true chr1: 22952779-22963992 Medicago truncatula
Medtr1g053970 10.0kb upstream 10.0kb upstream 10000 false chr1: 22953993-22963992 Medicago truncatula
Medtr1g053970 10.0kb downstream 10.0kb downstream 11214 true chr1: 22942779-22953992 Medicago truncatula
Medtr1g053970 10.0kb downstream 10.0kb downstream 10000 false chr1: 22942779-22952778 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296727 5265 Fabidae View MSA
124038723 5270 Rosid View MSA
123749159 5271 Pentapetalae View MSA
122794913 5272 Eudicot View MSA
122046443 5273 Angiosperm View MSA
121349982 5274 Embryophyte View MSA
123381528 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.249       High
cufflinks 0.107        
cufflinks 0.031     Low Low
cufflinks 0.113        
cufflinks 0.058     Low  
cufflinks 0.182        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.07        
cufflinks 0.238       High

0 Strain