Gene : Medtr1g053955 M. truncatula Mt4.0v1

Defline:  (1 of 1) PTHR10799:SF603 - PROTEIN PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 Description:  helicase
Genomic Order:  2840 Name:  ? Medtr1g053955
Secondary Identifier:  ? PAC:31099623

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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g053955 0.5kb upstream 0.5kb upstream 18837 true chr1: 22923823-22942659 Medicago truncatula
Medtr1g053955 0.5kb upstream 0.5kb upstream 500 false chr1: 22923823-22924322 Medicago truncatula
Medtr1g053955 0.5kb downstream 0.5kb downstream 18837 true chr1: 22924323-22943159 Medicago truncatula
Medtr1g053955 0.5kb downstream 0.5kb downstream 500 false chr1: 22942660-22943159 Medicago truncatula
Medtr1g053955 1.0kb upstream 1.0kb upstream 19337 true chr1: 22923323-22942659 Medicago truncatula
Medtr1g053955 1.0kb upstream 1.0kb upstream 1000 false chr1: 22923323-22924322 Medicago truncatula
Medtr1g053955 1.0kb downstream 1.0kb downstream 19337 true chr1: 22924323-22943659 Medicago truncatula
Medtr1g053955 1.0kb downstream 1.0kb downstream 1000 false chr1: 22942660-22943659 Medicago truncatula
Medtr1g053955 2.0kb upstream 2.0kb upstream 20337 true chr1: 22922323-22942659 Medicago truncatula
Medtr1g053955 2.0kb upstream 2.0kb upstream 2000 false chr1: 22922323-22924322 Medicago truncatula
Medtr1g053955 2.0kb downstream 2.0kb downstream 20337 true chr1: 22924323-22944659 Medicago truncatula
Medtr1g053955 2.0kb downstream 2.0kb downstream 2000 false chr1: 22942660-22944659 Medicago truncatula
Medtr1g053955 5.0kb upstream 5.0kb upstream 23337 true chr1: 22919323-22942659 Medicago truncatula
Medtr1g053955 5.0kb upstream 5.0kb upstream 5000 false chr1: 22919323-22924322 Medicago truncatula
Medtr1g053955 5.0kb downstream 5.0kb downstream 23337 true chr1: 22924323-22947659 Medicago truncatula
Medtr1g053955 5.0kb downstream 5.0kb downstream 5000 false chr1: 22942660-22947659 Medicago truncatula
Medtr1g053955 10.0kb upstream 10.0kb upstream 28337 true chr1: 22914323-22942659 Medicago truncatula
Medtr1g053955 10.0kb upstream 10.0kb upstream 10000 false chr1: 22914323-22924322 Medicago truncatula
Medtr1g053955 10.0kb downstream 10.0kb downstream 28337 true chr1: 22924323-22952659 Medicago truncatula
Medtr1g053955 10.0kb downstream 10.0kb downstream 10000 false chr1: 22942660-22952659 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303183 5265 Fabidae View MSA
124061293 5270 Rosid View MSA
123739512 5271 Pentapetalae View MSA
122790205 5272 Eudicot View MSA
122045682 5273 Angiosperm View MSA
121347848 5274 Embryophyte View MSA
123428510 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.973       High
cufflinks 2.22        
cufflinks 3.236        
cufflinks 0.368       Low
cufflinks 3.022        
cufflinks 0.432       Low
cufflinks 1.167        
cufflinks 2.66        
cufflinks 0.692        

0 Strain