Gene : Medtr1g054965 M. truncatula Mt4.0v1
Defline:  (1 of 2) 5.2.1.13 - Prolycopene isomerase / CRTISO Description:  carotenoid isomerase
Genomic Order:  2942 Name:  ? Medtr1g054965
Secondary Identifier:  ? PAC:31096614
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula CAROTENOID-PWY Medicago truncatula pathologic  
Mtruncatula PWY-6475 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g054965 0.5kb upstream 0.5kb upstream 6416 true chr1: 24148207-24154622 Medicago truncatula
Medtr1g054965 0.5kb upstream 0.5kb upstream 500 false chr1: 24154123-24154622 Medicago truncatula
Medtr1g054965 0.5kb downstream 0.5kb downstream 6416 true chr1: 24147707-24154122 Medicago truncatula
Medtr1g054965 0.5kb downstream 0.5kb downstream 500 false chr1: 24147707-24148206 Medicago truncatula
Medtr1g054965 1.0kb upstream 1.0kb upstream 6916 true chr1: 24148207-24155122 Medicago truncatula
Medtr1g054965 1.0kb upstream 1.0kb upstream 1000 false chr1: 24154123-24155122 Medicago truncatula
Medtr1g054965 1.0kb downstream 1.0kb downstream 6916 true chr1: 24147207-24154122 Medicago truncatula
Medtr1g054965 1.0kb downstream 1.0kb downstream 1000 false chr1: 24147207-24148206 Medicago truncatula
Medtr1g054965 2.0kb upstream 2.0kb upstream 7916 true chr1: 24148207-24156122 Medicago truncatula
Medtr1g054965 2.0kb upstream 2.0kb upstream 2000 false chr1: 24154123-24156122 Medicago truncatula
Medtr1g054965 2.0kb downstream 2.0kb downstream 7916 true chr1: 24146207-24154122 Medicago truncatula
Medtr1g054965 2.0kb downstream 2.0kb downstream 2000 false chr1: 24146207-24148206 Medicago truncatula
Medtr1g054965 5.0kb upstream 5.0kb upstream 10916 true chr1: 24148207-24159122 Medicago truncatula
Medtr1g054965 5.0kb upstream 5.0kb upstream 5000 false chr1: 24154123-24159122 Medicago truncatula
Medtr1g054965 5.0kb downstream 5.0kb downstream 10916 true chr1: 24143207-24154122 Medicago truncatula
Medtr1g054965 5.0kb downstream 5.0kb downstream 5000 false chr1: 24143207-24148206 Medicago truncatula
Medtr1g054965 10.0kb upstream 10.0kb upstream 15916 true chr1: 24148207-24164122 Medicago truncatula
Medtr1g054965 10.0kb upstream 10.0kb upstream 10000 false chr1: 24154123-24164122 Medicago truncatula
Medtr1g054965 10.0kb downstream 10.0kb downstream 15916 true chr1: 24138207-24154122 Medicago truncatula
Medtr1g054965 10.0kb downstream 10.0kb downstream 10000 false chr1: 24138207-24148206 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026345 5273 Angiosperm View MSA
122309577 5265 Fabidae View MSA
124064637 5270 Rosid View MSA
123738016 5271 Pentapetalae View MSA
122791420 5272 Eudicot View MSA
121345795 5274 Embryophyte View MSA
123425130 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.44        
cufflinks 1.361        
cufflinks 1.052        
cufflinks 0.68        
cufflinks 1.581        
cufflinks 0.122     Low Low
cufflinks 1.114        
cufflinks 1.218        
cufflinks 0.71        

0 Strain