Gene : Medtr1g038400 M. truncatula Mt4.0v1

Defline:  (1 of 4) PTHR10694:SF33 - TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN Description:  transcription factor jumonji family protein, putative
Genomic Order:  1864 Name:  ? Medtr1g038400
Secondary Identifier:  ? PAC:31096656

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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g038400 0.5kb upstream 0.5kb upstream 3460 true chr1: 14138156-14141615 Medicago truncatula
Medtr1g038400 0.5kb upstream 0.5kb upstream 500 false chr1: 14138156-14138655 Medicago truncatula
Medtr1g038400 0.5kb downstream 0.5kb downstream 3460 true chr1: 14138656-14142115 Medicago truncatula
Medtr1g038400 0.5kb downstream 0.5kb downstream 500 false chr1: 14141616-14142115 Medicago truncatula
Medtr1g038400 1.0kb upstream 1.0kb upstream 3960 true chr1: 14137656-14141615 Medicago truncatula
Medtr1g038400 1.0kb upstream 1.0kb upstream 1000 false chr1: 14137656-14138655 Medicago truncatula
Medtr1g038400 1.0kb downstream 1.0kb downstream 3960 true chr1: 14138656-14142615 Medicago truncatula
Medtr1g038400 1.0kb downstream 1.0kb downstream 1000 false chr1: 14141616-14142615 Medicago truncatula
Medtr1g038400 2.0kb upstream 2.0kb upstream 4960 true chr1: 14136656-14141615 Medicago truncatula
Medtr1g038400 2.0kb upstream 2.0kb upstream 2000 false chr1: 14136656-14138655 Medicago truncatula
Medtr1g038400 2.0kb downstream 2.0kb downstream 4960 true chr1: 14138656-14143615 Medicago truncatula
Medtr1g038400 2.0kb downstream 2.0kb downstream 2000 false chr1: 14141616-14143615 Medicago truncatula
Medtr1g038400 5.0kb upstream 5.0kb upstream 7960 true chr1: 14133656-14141615 Medicago truncatula
Medtr1g038400 5.0kb upstream 5.0kb upstream 5000 false chr1: 14133656-14138655 Medicago truncatula
Medtr1g038400 5.0kb downstream 5.0kb downstream 7960 true chr1: 14138656-14146615 Medicago truncatula
Medtr1g038400 5.0kb downstream 5.0kb downstream 5000 false chr1: 14141616-14146615 Medicago truncatula
Medtr1g038400 10.0kb upstream 10.0kb upstream 12960 true chr1: 14128656-14141615 Medicago truncatula
Medtr1g038400 10.0kb upstream 10.0kb upstream 10000 false chr1: 14128656-14138655 Medicago truncatula
Medtr1g038400 10.0kb downstream 10.0kb downstream 12960 true chr1: 14138656-14151615 Medicago truncatula
Medtr1g038400 10.0kb downstream 10.0kb downstream 10000 false chr1: 14141616-14151615 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296597 5265 Fabidae View MSA
124075033 5270 Rosid View MSA
123746052 5271 Pentapetalae View MSA
122771756 5272 Eudicot View MSA
122050637 5273 Angiosperm View MSA
123428928 5275 Viridiplantae View MSA
121350129 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain