Gene : Medtr1g038340 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR15818 - G PATCH AND KOW-CONTAINING Description:  DExH-box splicing factor-binding site protein
Genomic Order:  1868 Name:  ? Medtr1g038340
Secondary Identifier:  ? PAC:31100511
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g038340 0.5kb upstream 0.5kb upstream 4426 true chr1: 14162322-14166747 Medicago truncatula
Medtr1g038340 0.5kb upstream 0.5kb upstream 500 false chr1: 14166248-14166747 Medicago truncatula
Medtr1g038340 0.5kb downstream 0.5kb downstream 4426 true chr1: 14161822-14166247 Medicago truncatula
Medtr1g038340 0.5kb downstream 0.5kb downstream 500 false chr1: 14161822-14162321 Medicago truncatula
Medtr1g038340 1.0kb upstream 1.0kb upstream 4926 true chr1: 14162322-14167247 Medicago truncatula
Medtr1g038340 1.0kb upstream 1.0kb upstream 1000 false chr1: 14166248-14167247 Medicago truncatula
Medtr1g038340 1.0kb downstream 1.0kb downstream 4926 true chr1: 14161322-14166247 Medicago truncatula
Medtr1g038340 1.0kb downstream 1.0kb downstream 1000 false chr1: 14161322-14162321 Medicago truncatula
Medtr1g038340 2.0kb upstream 2.0kb upstream 5926 true chr1: 14162322-14168247 Medicago truncatula
Medtr1g038340 2.0kb upstream 2.0kb upstream 2000 false chr1: 14166248-14168247 Medicago truncatula
Medtr1g038340 2.0kb downstream 2.0kb downstream 5926 true chr1: 14160322-14166247 Medicago truncatula
Medtr1g038340 2.0kb downstream 2.0kb downstream 2000 false chr1: 14160322-14162321 Medicago truncatula
Medtr1g038340 5.0kb upstream 5.0kb upstream 8926 true chr1: 14162322-14171247 Medicago truncatula
Medtr1g038340 5.0kb upstream 5.0kb upstream 5000 false chr1: 14166248-14171247 Medicago truncatula
Medtr1g038340 5.0kb downstream 5.0kb downstream 8926 true chr1: 14157322-14166247 Medicago truncatula
Medtr1g038340 5.0kb downstream 5.0kb downstream 5000 false chr1: 14157322-14162321 Medicago truncatula
Medtr1g038340 10.0kb upstream 10.0kb upstream 13926 true chr1: 14162322-14176247 Medicago truncatula
Medtr1g038340 10.0kb upstream 10.0kb upstream 10000 false chr1: 14166248-14176247 Medicago truncatula
Medtr1g038340 10.0kb downstream 10.0kb downstream 13926 true chr1: 14152322-14166247 Medicago truncatula
Medtr1g038340 10.0kb downstream 10.0kb downstream 10000 false chr1: 14152322-14162321 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303537 5265 Fabidae View MSA
124064997 5270 Rosid View MSA
123746518 5271 Pentapetalae View MSA
122790026 5272 Eudicot View MSA
122046312 5273 Angiosperm View MSA
121346621 5274 Embryophyte View MSA
123426074 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.745        
cufflinks 5.886        
cufflinks 6.828        
cufflinks 8.927     High High
cufflinks 6.598        
cufflinks 5.108       Low
cufflinks 8.485        
cufflinks 5.735        
cufflinks 9.535       High

0 Strain