Gene : Medtr1g040705 M. truncatula Mt4.0v1
Defline:  (1 of 12) PF01535//PF14432 - PPR repeat (PPR) // DYW family of nucleic acid deaminases (DYW_deaminase) Description:  PPR containing plant-like protein
Genomic Order:  1991 Name:  ? Medtr1g040705
Secondary Identifier:  ? PAC:31100254
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g040705 0.5kb upstream 0.5kb upstream 7286 true chr1: 15075730-15083015 Medicago truncatula
Medtr1g040705 0.5kb upstream 0.5kb upstream 500 false chr1: 15075730-15076229 Medicago truncatula
Medtr1g040705 0.5kb downstream 0.5kb downstream 7286 true chr1: 15076230-15083515 Medicago truncatula
Medtr1g040705 0.5kb downstream 0.5kb downstream 500 false chr1: 15083016-15083515 Medicago truncatula
Medtr1g040705 1.0kb upstream 1.0kb upstream 7786 true chr1: 15075230-15083015 Medicago truncatula
Medtr1g040705 1.0kb upstream 1.0kb upstream 1000 false chr1: 15075230-15076229 Medicago truncatula
Medtr1g040705 1.0kb downstream 1.0kb downstream 7786 true chr1: 15076230-15084015 Medicago truncatula
Medtr1g040705 1.0kb downstream 1.0kb downstream 1000 false chr1: 15083016-15084015 Medicago truncatula
Medtr1g040705 2.0kb upstream 2.0kb upstream 8786 true chr1: 15074230-15083015 Medicago truncatula
Medtr1g040705 2.0kb upstream 2.0kb upstream 2000 false chr1: 15074230-15076229 Medicago truncatula
Medtr1g040705 2.0kb downstream 2.0kb downstream 8786 true chr1: 15076230-15085015 Medicago truncatula
Medtr1g040705 2.0kb downstream 2.0kb downstream 2000 false chr1: 15083016-15085015 Medicago truncatula
Medtr1g040705 5.0kb upstream 5.0kb upstream 11786 true chr1: 15071230-15083015 Medicago truncatula
Medtr1g040705 5.0kb upstream 5.0kb upstream 5000 false chr1: 15071230-15076229 Medicago truncatula
Medtr1g040705 5.0kb downstream 5.0kb downstream 11786 true chr1: 15076230-15088015 Medicago truncatula
Medtr1g040705 5.0kb downstream 5.0kb downstream 5000 false chr1: 15083016-15088015 Medicago truncatula
Medtr1g040705 10.0kb upstream 10.0kb upstream 16786 true chr1: 15066230-15083015 Medicago truncatula
Medtr1g040705 10.0kb upstream 10.0kb upstream 10000 false chr1: 15066230-15076229 Medicago truncatula
Medtr1g040705 10.0kb downstream 10.0kb downstream 16786 true chr1: 15076230-15093015 Medicago truncatula
Medtr1g040705 10.0kb downstream 10.0kb downstream 10000 false chr1: 15083016-15093015 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299130 5265 Fabidae View MSA
124066388 5270 Rosid View MSA
123750280 5271 Pentapetalae View MSA
122796437 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.239        
cufflinks 0.286        
cufflinks 0.344        
cufflinks 0.081       Low
cufflinks 0.45       High
cufflinks 0.071     Low Low
cufflinks 0.136        
cufflinks 0.252        
cufflinks 0.089     Low Low

0 Strain