Gene : Medtr1g041390 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR33428:SF1 - CHLOROPHYLLASE-2, CHLOROPLASTIC Description:  chlorophyllase enzyme
Genomic Order:  2034 Name:  ? Medtr1g041390
Secondary Identifier:  ? PAC:31097691
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5098 Medicago truncatula pathologic  
Mtruncatula PWY-6927 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g041390 0.5kb upstream 0.5kb upstream 1806 true chr1: 15448384-15450189 Medicago truncatula
Medtr1g041390 0.5kb upstream 0.5kb upstream 500 false chr1: 15449690-15450189 Medicago truncatula
Medtr1g041390 0.5kb downstream 0.5kb downstream 1806 true chr1: 15447884-15449689 Medicago truncatula
Medtr1g041390 0.5kb downstream 0.5kb downstream 500 false chr1: 15447884-15448383 Medicago truncatula
Medtr1g041390 1.0kb upstream 1.0kb upstream 2306 true chr1: 15448384-15450689 Medicago truncatula
Medtr1g041390 1.0kb upstream 1.0kb upstream 1000 false chr1: 15449690-15450689 Medicago truncatula
Medtr1g041390 1.0kb downstream 1.0kb downstream 2306 true chr1: 15447384-15449689 Medicago truncatula
Medtr1g041390 1.0kb downstream 1.0kb downstream 1000 false chr1: 15447384-15448383 Medicago truncatula
Medtr1g041390 2.0kb upstream 2.0kb upstream 3306 true chr1: 15448384-15451689 Medicago truncatula
Medtr1g041390 2.0kb upstream 2.0kb upstream 2000 false chr1: 15449690-15451689 Medicago truncatula
Medtr1g041390 2.0kb downstream 2.0kb downstream 3306 true chr1: 15446384-15449689 Medicago truncatula
Medtr1g041390 2.0kb downstream 2.0kb downstream 2000 false chr1: 15446384-15448383 Medicago truncatula
Medtr1g041390 5.0kb upstream 5.0kb upstream 6306 true chr1: 15448384-15454689 Medicago truncatula
Medtr1g041390 5.0kb upstream 5.0kb upstream 5000 false chr1: 15449690-15454689 Medicago truncatula
Medtr1g041390 5.0kb downstream 5.0kb downstream 6306 true chr1: 15443384-15449689 Medicago truncatula
Medtr1g041390 5.0kb downstream 5.0kb downstream 5000 false chr1: 15443384-15448383 Medicago truncatula
Medtr1g041390 10.0kb upstream 10.0kb upstream 11306 true chr1: 15448384-15459689 Medicago truncatula
Medtr1g041390 10.0kb upstream 10.0kb upstream 10000 false chr1: 15449690-15459689 Medicago truncatula
Medtr1g041390 10.0kb downstream 10.0kb downstream 11306 true chr1: 15438384-15449689 Medicago truncatula
Medtr1g041390 10.0kb downstream 10.0kb downstream 10000 false chr1: 15438384-15448383 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303758 5265 Fabidae View MSA
124065690 5270 Rosid View MSA
123737382 5271 Pentapetalae View MSA
122788570 5272 Eudicot View MSA
122043389 5273 Angiosperm View MSA
121344751 5274 Embryophyte View MSA
123428003 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.014     Low Low
cufflinks 4.13        
cufflinks 14.245     High High
cufflinks 0.2        
cufflinks 17.692     High High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low Low
cufflinks 8.95        
cufflinks 0.023     Low  

0 Strain