Gene : Medtr1g043000 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR13421:SF16 - SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 3 Description:  snRNA activating complex family protein
Genomic Order:  2126 Name:  ? Medtr1g043000
Secondary Identifier:  ? PAC:31096643
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g043000 0.5kb upstream 0.5kb upstream 9792 true chr1: 16098741-16108532 Medicago truncatula
Medtr1g043000 0.5kb upstream 0.5kb upstream 500 false chr1: 16098741-16099240 Medicago truncatula
Medtr1g043000 0.5kb downstream 0.5kb downstream 9792 true chr1: 16099241-16109032 Medicago truncatula
Medtr1g043000 0.5kb downstream 0.5kb downstream 500 false chr1: 16108533-16109032 Medicago truncatula
Medtr1g043000 1.0kb upstream 1.0kb upstream 10292 true chr1: 16098241-16108532 Medicago truncatula
Medtr1g043000 1.0kb upstream 1.0kb upstream 1000 false chr1: 16098241-16099240 Medicago truncatula
Medtr1g043000 1.0kb downstream 1.0kb downstream 10292 true chr1: 16099241-16109532 Medicago truncatula
Medtr1g043000 1.0kb downstream 1.0kb downstream 1000 false chr1: 16108533-16109532 Medicago truncatula
Medtr1g043000 2.0kb upstream 2.0kb upstream 11292 true chr1: 16097241-16108532 Medicago truncatula
Medtr1g043000 2.0kb upstream 2.0kb upstream 2000 false chr1: 16097241-16099240 Medicago truncatula
Medtr1g043000 2.0kb downstream 2.0kb downstream 11292 true chr1: 16099241-16110532 Medicago truncatula
Medtr1g043000 2.0kb downstream 2.0kb downstream 2000 false chr1: 16108533-16110532 Medicago truncatula
Medtr1g043000 5.0kb upstream 5.0kb upstream 14292 true chr1: 16094241-16108532 Medicago truncatula
Medtr1g043000 5.0kb upstream 5.0kb upstream 5000 false chr1: 16094241-16099240 Medicago truncatula
Medtr1g043000 5.0kb downstream 5.0kb downstream 14292 true chr1: 16099241-16113532 Medicago truncatula
Medtr1g043000 5.0kb downstream 5.0kb downstream 5000 false chr1: 16108533-16113532 Medicago truncatula
Medtr1g043000 10.0kb upstream 10.0kb upstream 19292 true chr1: 16089241-16108532 Medicago truncatula
Medtr1g043000 10.0kb upstream 10.0kb upstream 10000 false chr1: 16089241-16099240 Medicago truncatula
Medtr1g043000 10.0kb downstream 10.0kb downstream 19292 true chr1: 16099241-16118532 Medicago truncatula
Medtr1g043000 10.0kb downstream 10.0kb downstream 10000 false chr1: 16108533-16118532 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299313 5265 Fabidae View MSA
124050343 5270 Rosid View MSA
123737692 5271 Pentapetalae View MSA
122795479 5272 Eudicot View MSA
122043985 5273 Angiosperm View MSA
121347836 5274 Embryophyte View MSA
123424819 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.109       High
cufflinks 0.986        
cufflinks 1.221        
cufflinks 0.548        
cufflinks 1.235        
cufflinks 0.345       Low
cufflinks 1.041        
cufflinks 0.95        
cufflinks 0.735        

0 Strain