Gene : Medtr1g042820 M. truncatula Mt4.0v1
Defline:  (1 of 50) PF05553 - Cotton fibre expressed protein (DUF761) Description:  DUF761 domain protein
Genomic Order:  2118 Name:  ? Medtr1g042820
Secondary Identifier:  ? PAC:31097488
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g042820 0.5kb upstream 0.5kb upstream 2298 true chr1: 16020153-16022450 Medicago truncatula
Medtr1g042820 0.5kb upstream 0.5kb upstream 500 false chr1: 16020153-16020652 Medicago truncatula
Medtr1g042820 0.5kb downstream 0.5kb downstream 2298 true chr1: 16020653-16022950 Medicago truncatula
Medtr1g042820 0.5kb downstream 0.5kb downstream 500 false chr1: 16022451-16022950 Medicago truncatula
Medtr1g042820 1.0kb upstream 1.0kb upstream 2798 true chr1: 16019653-16022450 Medicago truncatula
Medtr1g042820 1.0kb upstream 1.0kb upstream 1000 false chr1: 16019653-16020652 Medicago truncatula
Medtr1g042820 1.0kb downstream 1.0kb downstream 2798 true chr1: 16020653-16023450 Medicago truncatula
Medtr1g042820 1.0kb downstream 1.0kb downstream 1000 false chr1: 16022451-16023450 Medicago truncatula
Medtr1g042820 2.0kb upstream 2.0kb upstream 3798 true chr1: 16018653-16022450 Medicago truncatula
Medtr1g042820 2.0kb upstream 2.0kb upstream 2000 false chr1: 16018653-16020652 Medicago truncatula
Medtr1g042820 2.0kb downstream 2.0kb downstream 3798 true chr1: 16020653-16024450 Medicago truncatula
Medtr1g042820 2.0kb downstream 2.0kb downstream 2000 false chr1: 16022451-16024450 Medicago truncatula
Medtr1g042820 5.0kb upstream 5.0kb upstream 6798 true chr1: 16015653-16022450 Medicago truncatula
Medtr1g042820 5.0kb upstream 5.0kb upstream 5000 false chr1: 16015653-16020652 Medicago truncatula
Medtr1g042820 5.0kb downstream 5.0kb downstream 6798 true chr1: 16020653-16027450 Medicago truncatula
Medtr1g042820 5.0kb downstream 5.0kb downstream 5000 false chr1: 16022451-16027450 Medicago truncatula
Medtr1g042820 10.0kb upstream 10.0kb upstream 11798 true chr1: 16010653-16022450 Medicago truncatula
Medtr1g042820 10.0kb upstream 10.0kb upstream 10000 false chr1: 16010653-16020652 Medicago truncatula
Medtr1g042820 10.0kb downstream 10.0kb downstream 11798 true chr1: 16020653-16032450 Medicago truncatula
Medtr1g042820 10.0kb downstream 10.0kb downstream 10000 false chr1: 16022451-16032450 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303616 5265 Fabidae View MSA
124069006 5270 Rosid View MSA
123747839 5271 Pentapetalae View MSA
122792637 5272 Eudicot View MSA
122050449 5273 Angiosperm View MSA
121311915 5274 Embryophyte View MSA
123349144 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.852        
cufflinks 5.115        
cufflinks 5.234        
cufflinks 11.317     High  
cufflinks 7.021        
cufflinks 49.945     High High
cufflinks 34.15     High High
cufflinks 5.602        
cufflinks 8.59        

0 Strain