Gene : Medtr1g052500 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR12914 - PARTNER OF SLD5 Description:  DNA replication complex GINS protein PSF1
Genomic Order:  2710 Name:  ? Medtr1g052500
Secondary Identifier:  ? PAC:31097249
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g052500 0.5kb upstream 0.5kb upstream 4567 true chr1: 21356621-21361187 Medicago truncatula
Medtr1g052500 0.5kb upstream 0.5kb upstream 500 false chr1: 21356621-21357120 Medicago truncatula
Medtr1g052500 0.5kb downstream 0.5kb downstream 4567 true chr1: 21357121-21361687 Medicago truncatula
Medtr1g052500 0.5kb downstream 0.5kb downstream 500 false chr1: 21361188-21361687 Medicago truncatula
Medtr1g052500 1.0kb upstream 1.0kb upstream 5067 true chr1: 21356121-21361187 Medicago truncatula
Medtr1g052500 1.0kb upstream 1.0kb upstream 1000 false chr1: 21356121-21357120 Medicago truncatula
Medtr1g052500 1.0kb downstream 1.0kb downstream 5067 true chr1: 21357121-21362187 Medicago truncatula
Medtr1g052500 1.0kb downstream 1.0kb downstream 1000 false chr1: 21361188-21362187 Medicago truncatula
Medtr1g052500 2.0kb upstream 2.0kb upstream 6067 true chr1: 21355121-21361187 Medicago truncatula
Medtr1g052500 2.0kb upstream 2.0kb upstream 2000 false chr1: 21355121-21357120 Medicago truncatula
Medtr1g052500 2.0kb downstream 2.0kb downstream 6067 true chr1: 21357121-21363187 Medicago truncatula
Medtr1g052500 2.0kb downstream 2.0kb downstream 2000 false chr1: 21361188-21363187 Medicago truncatula
Medtr1g052500 5.0kb upstream 5.0kb upstream 9067 true chr1: 21352121-21361187 Medicago truncatula
Medtr1g052500 5.0kb upstream 5.0kb upstream 5000 false chr1: 21352121-21357120 Medicago truncatula
Medtr1g052500 5.0kb downstream 5.0kb downstream 9067 true chr1: 21357121-21366187 Medicago truncatula
Medtr1g052500 5.0kb downstream 5.0kb downstream 5000 false chr1: 21361188-21366187 Medicago truncatula
Medtr1g052500 10.0kb upstream 10.0kb upstream 14067 true chr1: 21347121-21361187 Medicago truncatula
Medtr1g052500 10.0kb upstream 10.0kb upstream 10000 false chr1: 21347121-21357120 Medicago truncatula
Medtr1g052500 10.0kb downstream 10.0kb downstream 14067 true chr1: 21357121-21371187 Medicago truncatula
Medtr1g052500 10.0kb downstream 10.0kb downstream 10000 false chr1: 21361188-21371187 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308679 5265 Fabidae View MSA
124065475 5270 Rosid View MSA
123736911 5271 Pentapetalae View MSA
122793813 5272 Eudicot View MSA
122045601 5273 Angiosperm View MSA
121344655 5274 Embryophyte View MSA
123424278 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.247       High
cufflinks 0.047     Low Low
cufflinks 0.052     Low Low
cufflinks 0.097        
cufflinks 0.123        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.243       High
cufflinks 0.119        
cufflinks 0.213        

0 Strain