Gene : Medtr1g046250 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR31332:SF0 - 7-HYDROXYMETHYL CHLOROPHYLL A REDUCTASE, CHLOROPLASTIC Description:  coenzyme F420-reducing hydrogenase, beta subunit
Genomic Order:  2278 Name:  ? Medtr1g046250
Secondary Identifier:  ? PAC:31096860
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5068 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g046250 0.5kb upstream 0.5kb upstream 8429 true chr1: 17417405-17425833 Medicago truncatula
Medtr1g046250 0.5kb upstream 0.5kb upstream 500 false chr1: 17425334-17425833 Medicago truncatula
Medtr1g046250 0.5kb downstream 0.5kb downstream 8429 true chr1: 17416905-17425333 Medicago truncatula
Medtr1g046250 0.5kb downstream 0.5kb downstream 500 false chr1: 17416905-17417404 Medicago truncatula
Medtr1g046250 1.0kb upstream 1.0kb upstream 8929 true chr1: 17417405-17426333 Medicago truncatula
Medtr1g046250 1.0kb upstream 1.0kb upstream 1000 false chr1: 17425334-17426333 Medicago truncatula
Medtr1g046250 1.0kb downstream 1.0kb downstream 8929 true chr1: 17416405-17425333 Medicago truncatula
Medtr1g046250 1.0kb downstream 1.0kb downstream 1000 false chr1: 17416405-17417404 Medicago truncatula
Medtr1g046250 2.0kb upstream 2.0kb upstream 9929 true chr1: 17417405-17427333 Medicago truncatula
Medtr1g046250 2.0kb upstream 2.0kb upstream 2000 false chr1: 17425334-17427333 Medicago truncatula
Medtr1g046250 2.0kb downstream 2.0kb downstream 9929 true chr1: 17415405-17425333 Medicago truncatula
Medtr1g046250 2.0kb downstream 2.0kb downstream 2000 false chr1: 17415405-17417404 Medicago truncatula
Medtr1g046250 5.0kb upstream 5.0kb upstream 12929 true chr1: 17417405-17430333 Medicago truncatula
Medtr1g046250 5.0kb upstream 5.0kb upstream 5000 false chr1: 17425334-17430333 Medicago truncatula
Medtr1g046250 5.0kb downstream 5.0kb downstream 12929 true chr1: 17412405-17425333 Medicago truncatula
Medtr1g046250 5.0kb downstream 5.0kb downstream 5000 false chr1: 17412405-17417404 Medicago truncatula
Medtr1g046250 10.0kb upstream 10.0kb upstream 17929 true chr1: 17417405-17435333 Medicago truncatula
Medtr1g046250 10.0kb upstream 10.0kb upstream 10000 false chr1: 17425334-17435333 Medicago truncatula
Medtr1g046250 10.0kb downstream 10.0kb downstream 17929 true chr1: 17407405-17425333 Medicago truncatula
Medtr1g046250 10.0kb downstream 10.0kb downstream 10000 false chr1: 17407405-17417404 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308112 5265 Fabidae View MSA
124061681 5270 Rosid View MSA
123745545 5271 Pentapetalae View MSA
122786931 5272 Eudicot View MSA
122042244 5273 Angiosperm View MSA
121347616 5274 Embryophyte View MSA
123428400 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.04     Low  
cufflinks 6.428        
cufflinks 4.654        
cufflinks 0.003     Low Low
cufflinks 5.803        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.064     Low  
cufflinks 5.011        
cufflinks 0.014     Low  

0 Strain