Gene : Medtr1g045490 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR23083//PTHR23083:SF380 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR Description:  calcium-binding EF hand protein
Genomic Order:  2230 Name:  ? Medtr1g045490
Secondary Identifier:  ? PAC:31095244
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g045490 0.5kb upstream 0.5kb upstream 3771 true chr1: 17064168-17067938 Medicago truncatula
Medtr1g045490 0.5kb upstream 0.5kb upstream 500 false chr1: 17064168-17064667 Medicago truncatula
Medtr1g045490 0.5kb downstream 0.5kb downstream 3771 true chr1: 17064668-17068438 Medicago truncatula
Medtr1g045490 0.5kb downstream 0.5kb downstream 500 false chr1: 17067939-17068438 Medicago truncatula
Medtr1g045490 1.0kb upstream 1.0kb upstream 4271 true chr1: 17063668-17067938 Medicago truncatula
Medtr1g045490 1.0kb upstream 1.0kb upstream 1000 false chr1: 17063668-17064667 Medicago truncatula
Medtr1g045490 1.0kb downstream 1.0kb downstream 4271 true chr1: 17064668-17068938 Medicago truncatula
Medtr1g045490 1.0kb downstream 1.0kb downstream 1000 false chr1: 17067939-17068938 Medicago truncatula
Medtr1g045490 2.0kb upstream 2.0kb upstream 5271 true chr1: 17062668-17067938 Medicago truncatula
Medtr1g045490 2.0kb upstream 2.0kb upstream 2000 false chr1: 17062668-17064667 Medicago truncatula
Medtr1g045490 2.0kb downstream 2.0kb downstream 5271 true chr1: 17064668-17069938 Medicago truncatula
Medtr1g045490 2.0kb downstream 2.0kb downstream 2000 false chr1: 17067939-17069938 Medicago truncatula
Medtr1g045490 5.0kb upstream 5.0kb upstream 8271 true chr1: 17059668-17067938 Medicago truncatula
Medtr1g045490 5.0kb upstream 5.0kb upstream 5000 false chr1: 17059668-17064667 Medicago truncatula
Medtr1g045490 5.0kb downstream 5.0kb downstream 8271 true chr1: 17064668-17072938 Medicago truncatula
Medtr1g045490 5.0kb downstream 5.0kb downstream 5000 false chr1: 17067939-17072938 Medicago truncatula
Medtr1g045490 10.0kb upstream 10.0kb upstream 13271 true chr1: 17054668-17067938 Medicago truncatula
Medtr1g045490 10.0kb upstream 10.0kb upstream 10000 false chr1: 17054668-17064667 Medicago truncatula
Medtr1g045490 10.0kb downstream 10.0kb downstream 13271 true chr1: 17064668-17077938 Medicago truncatula
Medtr1g045490 10.0kb downstream 10.0kb downstream 10000 false chr1: 17067939-17077938 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303934 5265 Fabidae View MSA
124068399 5270 Rosid View MSA
123739608 5271 Pentapetalae View MSA
122792397 5272 Eudicot View MSA
122043324 5273 Angiosperm View MSA
121346107 5274 Embryophyte View MSA
123380332 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.576     High  
cufflinks 24.906     High  
cufflinks 28.626     High  
cufflinks 8.872       Low
cufflinks 28.806     High  
cufflinks 8.908       Low
cufflinks 16.583     High  
cufflinks 26.261     High  
cufflinks 13.758     High  

0 Strain