Gene : Medtr1g030480 M. truncatula Mt4.0v1
Defline:  (1 of 1) 1.14.13.122 - Chlorophyllide-a oxygenase / Cholorophyll-b synthase Description:  chlorophyllide A oxygenase
Genomic Order:  1393 Name:  ? Medtr1g030480
Secondary Identifier:  ? PAC:31093809
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5068 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g030480 0.5kb upstream 0.5kb upstream 5462 true chr1: 10436366-10441827 Medicago truncatula
Medtr1g030480 0.5kb upstream 0.5kb upstream 500 false chr1: 10441328-10441827 Medicago truncatula
Medtr1g030480 0.5kb downstream 0.5kb downstream 5462 true chr1: 10435866-10441327 Medicago truncatula
Medtr1g030480 0.5kb downstream 0.5kb downstream 500 false chr1: 10435866-10436365 Medicago truncatula
Medtr1g030480 1.0kb upstream 1.0kb upstream 5962 true chr1: 10436366-10442327 Medicago truncatula
Medtr1g030480 1.0kb upstream 1.0kb upstream 1000 false chr1: 10441328-10442327 Medicago truncatula
Medtr1g030480 1.0kb downstream 1.0kb downstream 5962 true chr1: 10435366-10441327 Medicago truncatula
Medtr1g030480 1.0kb downstream 1.0kb downstream 1000 false chr1: 10435366-10436365 Medicago truncatula
Medtr1g030480 2.0kb upstream 2.0kb upstream 6962 true chr1: 10436366-10443327 Medicago truncatula
Medtr1g030480 2.0kb upstream 2.0kb upstream 2000 false chr1: 10441328-10443327 Medicago truncatula
Medtr1g030480 2.0kb downstream 2.0kb downstream 6962 true chr1: 10434366-10441327 Medicago truncatula
Medtr1g030480 2.0kb downstream 2.0kb downstream 2000 false chr1: 10434366-10436365 Medicago truncatula
Medtr1g030480 5.0kb upstream 5.0kb upstream 9962 true chr1: 10436366-10446327 Medicago truncatula
Medtr1g030480 5.0kb upstream 5.0kb upstream 5000 false chr1: 10441328-10446327 Medicago truncatula
Medtr1g030480 5.0kb downstream 5.0kb downstream 9962 true chr1: 10431366-10441327 Medicago truncatula
Medtr1g030480 5.0kb downstream 5.0kb downstream 5000 false chr1: 10431366-10436365 Medicago truncatula
Medtr1g030480 10.0kb upstream 10.0kb upstream 14962 true chr1: 10436366-10451327 Medicago truncatula
Medtr1g030480 10.0kb upstream 10.0kb upstream 10000 false chr1: 10441328-10451327 Medicago truncatula
Medtr1g030480 10.0kb downstream 10.0kb downstream 14962 true chr1: 10426366-10441327 Medicago truncatula
Medtr1g030480 10.0kb downstream 10.0kb downstream 10000 false chr1: 10426366-10436365 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309423 5265 Fabidae View MSA
124067782 5270 Rosid View MSA
123744269 5271 Pentapetalae View MSA
122787506 5272 Eudicot View MSA
122048070 5273 Angiosperm View MSA
123429167 5275 Viridiplantae View MSA
121348979 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.878        
cufflinks 45.464     High High
cufflinks 23.167     High  
cufflinks 0.716        
cufflinks 42.134     High High
cufflinks 0.416       Low
cufflinks 0.893        
cufflinks 37.642     High High
cufflinks 1.69        

0 Strain