Gene : Medtr1g033830 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR31142:SF3 - PROTEIN TOM THREE HOMOLOG 1-RELATED Description:  tobamovirus multiplication-like protein
Genomic Order:  1631 Name:  ? Medtr1g033830
Secondary Identifier:  ? PAC:31097982
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g033830 0.5kb upstream 0.5kb upstream 7597 true chr1: 12229512-12237108 Medicago truncatula
Medtr1g033830 0.5kb upstream 0.5kb upstream 500 false chr1: 12229512-12230011 Medicago truncatula
Medtr1g033830 0.5kb downstream 0.5kb downstream 7597 true chr1: 12230012-12237608 Medicago truncatula
Medtr1g033830 0.5kb downstream 0.5kb downstream 500 false chr1: 12237109-12237608 Medicago truncatula
Medtr1g033830 1.0kb upstream 1.0kb upstream 8097 true chr1: 12229012-12237108 Medicago truncatula
Medtr1g033830 1.0kb upstream 1.0kb upstream 1000 false chr1: 12229012-12230011 Medicago truncatula
Medtr1g033830 1.0kb downstream 1.0kb downstream 8097 true chr1: 12230012-12238108 Medicago truncatula
Medtr1g033830 1.0kb downstream 1.0kb downstream 1000 false chr1: 12237109-12238108 Medicago truncatula
Medtr1g033830 2.0kb upstream 2.0kb upstream 9097 true chr1: 12228012-12237108 Medicago truncatula
Medtr1g033830 2.0kb upstream 2.0kb upstream 2000 false chr1: 12228012-12230011 Medicago truncatula
Medtr1g033830 2.0kb downstream 2.0kb downstream 9097 true chr1: 12230012-12239108 Medicago truncatula
Medtr1g033830 2.0kb downstream 2.0kb downstream 2000 false chr1: 12237109-12239108 Medicago truncatula
Medtr1g033830 5.0kb upstream 5.0kb upstream 12097 true chr1: 12225012-12237108 Medicago truncatula
Medtr1g033830 5.0kb upstream 5.0kb upstream 5000 false chr1: 12225012-12230011 Medicago truncatula
Medtr1g033830 5.0kb downstream 5.0kb downstream 12097 true chr1: 12230012-12242108 Medicago truncatula
Medtr1g033830 5.0kb downstream 5.0kb downstream 5000 false chr1: 12237109-12242108 Medicago truncatula
Medtr1g033830 10.0kb upstream 10.0kb upstream 17097 true chr1: 12220012-12237108 Medicago truncatula
Medtr1g033830 10.0kb upstream 10.0kb upstream 10000 false chr1: 12220012-12230011 Medicago truncatula
Medtr1g033830 10.0kb downstream 10.0kb downstream 17097 true chr1: 12230012-12247108 Medicago truncatula
Medtr1g033830 10.0kb downstream 10.0kb downstream 10000 false chr1: 12237109-12247108 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311267 5265 Fabidae View MSA
124070535 5270 Rosid View MSA
123753465 5271 Pentapetalae View MSA
122796045 5272 Eudicot View MSA
122049721 5273 Angiosperm View MSA
121345693 5274 Embryophyte View MSA
123426001 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.745        
cufflinks 5.188        
cufflinks 10.745     High High
cufflinks 5.773        
cufflinks 5.043        
cufflinks 5.16        
cufflinks 6.58        
cufflinks 6.593        
cufflinks 4.726        

0 Strain