Gene : Medtr1g033960 M. truncatula Mt4.0v1
Defline:  (1 of 599) PF13041 - PPR repeat family (PPR_2) Description:  PPR containing plant-like protein
Genomic Order:  1642 Name:  ? Medtr1g033960
Secondary Identifier:  ? PAC:31095477
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g033960 0.5kb upstream 0.5kb upstream 3872 true chr1: 12279095-12282966 Medicago truncatula
Medtr1g033960 0.5kb upstream 0.5kb upstream 500 false chr1: 12282467-12282966 Medicago truncatula
Medtr1g033960 0.5kb downstream 0.5kb downstream 3872 true chr1: 12278595-12282466 Medicago truncatula
Medtr1g033960 0.5kb downstream 0.5kb downstream 500 false chr1: 12278595-12279094 Medicago truncatula
Medtr1g033960 1.0kb upstream 1.0kb upstream 4372 true chr1: 12279095-12283466 Medicago truncatula
Medtr1g033960 1.0kb upstream 1.0kb upstream 1000 false chr1: 12282467-12283466 Medicago truncatula
Medtr1g033960 1.0kb downstream 1.0kb downstream 4372 true chr1: 12278095-12282466 Medicago truncatula
Medtr1g033960 1.0kb downstream 1.0kb downstream 1000 false chr1: 12278095-12279094 Medicago truncatula
Medtr1g033960 2.0kb upstream 2.0kb upstream 5372 true chr1: 12279095-12284466 Medicago truncatula
Medtr1g033960 2.0kb upstream 2.0kb upstream 2000 false chr1: 12282467-12284466 Medicago truncatula
Medtr1g033960 2.0kb downstream 2.0kb downstream 5372 true chr1: 12277095-12282466 Medicago truncatula
Medtr1g033960 2.0kb downstream 2.0kb downstream 2000 false chr1: 12277095-12279094 Medicago truncatula
Medtr1g033960 5.0kb upstream 5.0kb upstream 8372 true chr1: 12279095-12287466 Medicago truncatula
Medtr1g033960 5.0kb upstream 5.0kb upstream 5000 false chr1: 12282467-12287466 Medicago truncatula
Medtr1g033960 5.0kb downstream 5.0kb downstream 8372 true chr1: 12274095-12282466 Medicago truncatula
Medtr1g033960 5.0kb downstream 5.0kb downstream 5000 false chr1: 12274095-12279094 Medicago truncatula
Medtr1g033960 10.0kb upstream 10.0kb upstream 13372 true chr1: 12279095-12292466 Medicago truncatula
Medtr1g033960 10.0kb upstream 10.0kb upstream 10000 false chr1: 12282467-12292466 Medicago truncatula
Medtr1g033960 10.0kb downstream 10.0kb downstream 13372 true chr1: 12269095-12282466 Medicago truncatula
Medtr1g033960 10.0kb downstream 10.0kb downstream 10000 false chr1: 12269095-12279094 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300181 5265 Fabidae View MSA
124063635 5270 Rosid View MSA
123750862 5271 Pentapetalae View MSA
122792992 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.795        
cufflinks 0.626        
cufflinks 1.079       High
cufflinks 0.253       Low
cufflinks 1.136       High
cufflinks 0.294        
cufflinks 0.362        
cufflinks 0.759        
cufflinks 0.262       Low

0 Strain