Gene : Medtr1g078000 M. truncatula Mt4.0v1
Defline:  (1 of 2) 2.4.1.242 - NDP-glucose--starch glucosyltransferase / Waxy protein Description:  granule bound starch synthase I, putative
Genomic Order:  4244 Name:  ? Medtr1g078000
Secondary Identifier:  ? PAC:31095053
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-622 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g078000 0.5kb upstream 0.5kb upstream 5658 true chr1: 34871801-34877458 Medicago truncatula
Medtr1g078000 0.5kb upstream 0.5kb upstream 500 false chr1: 34876959-34877458 Medicago truncatula
Medtr1g078000 0.5kb downstream 0.5kb downstream 5658 true chr1: 34871301-34876958 Medicago truncatula
Medtr1g078000 0.5kb downstream 0.5kb downstream 500 false chr1: 34871301-34871800 Medicago truncatula
Medtr1g078000 1.0kb upstream 1.0kb upstream 6158 true chr1: 34871801-34877958 Medicago truncatula
Medtr1g078000 1.0kb upstream 1.0kb upstream 1000 false chr1: 34876959-34877958 Medicago truncatula
Medtr1g078000 1.0kb downstream 1.0kb downstream 6158 true chr1: 34870801-34876958 Medicago truncatula
Medtr1g078000 1.0kb downstream 1.0kb downstream 1000 false chr1: 34870801-34871800 Medicago truncatula
Medtr1g078000 2.0kb upstream 2.0kb upstream 7158 true chr1: 34871801-34878958 Medicago truncatula
Medtr1g078000 2.0kb upstream 2.0kb upstream 2000 false chr1: 34876959-34878958 Medicago truncatula
Medtr1g078000 2.0kb downstream 2.0kb downstream 7158 true chr1: 34869801-34876958 Medicago truncatula
Medtr1g078000 2.0kb downstream 2.0kb downstream 2000 false chr1: 34869801-34871800 Medicago truncatula
Medtr1g078000 5.0kb upstream 5.0kb upstream 10158 true chr1: 34871801-34881958 Medicago truncatula
Medtr1g078000 5.0kb upstream 5.0kb upstream 5000 false chr1: 34876959-34881958 Medicago truncatula
Medtr1g078000 5.0kb downstream 5.0kb downstream 10158 true chr1: 34866801-34876958 Medicago truncatula
Medtr1g078000 5.0kb downstream 5.0kb downstream 5000 false chr1: 34866801-34871800 Medicago truncatula
Medtr1g078000 10.0kb upstream 10.0kb upstream 15158 true chr1: 34871801-34886958 Medicago truncatula
Medtr1g078000 10.0kb upstream 10.0kb upstream 10000 false chr1: 34876959-34886958 Medicago truncatula
Medtr1g078000 10.0kb downstream 10.0kb downstream 15158 true chr1: 34861801-34876958 Medicago truncatula
Medtr1g078000 10.0kb downstream 10.0kb downstream 10000 false chr1: 34861801-34871800 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311550 5265 Fabidae View MSA
124071103 5270 Rosid View MSA
123740626 5271 Pentapetalae View MSA
122790728 5272 Eudicot View MSA
122042612 5273 Angiosperm View MSA
121345518 5274 Embryophyte View MSA
123424723 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.401     High High
cufflinks 5.208        
cufflinks 1.281        
cufflinks 0.837        
cufflinks 15.204     High  
cufflinks 0.025     Low Low
cufflinks 2.377        
cufflinks 3.02        
cufflinks 3.476        

0 Strain