Gene : Medtr1g078040 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR23198:SF4 - NUCLEOPORIN AUTOPEPTIDASE Description:  nucleoporin autopeptidase
Genomic Order:  4247 Name:  ? Medtr1g078040
Secondary Identifier:  ? PAC:31099069
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g078040 0.5kb upstream 0.5kb upstream 8267 true chr1: 34890792-34899058 Medicago truncatula
Medtr1g078040 0.5kb upstream 0.5kb upstream 500 false chr1: 34898559-34899058 Medicago truncatula
Medtr1g078040 0.5kb downstream 0.5kb downstream 8267 true chr1: 34890292-34898558 Medicago truncatula
Medtr1g078040 0.5kb downstream 0.5kb downstream 500 false chr1: 34890292-34890791 Medicago truncatula
Medtr1g078040 1.0kb upstream 1.0kb upstream 8767 true chr1: 34890792-34899558 Medicago truncatula
Medtr1g078040 1.0kb upstream 1.0kb upstream 1000 false chr1: 34898559-34899558 Medicago truncatula
Medtr1g078040 1.0kb downstream 1.0kb downstream 8767 true chr1: 34889792-34898558 Medicago truncatula
Medtr1g078040 1.0kb downstream 1.0kb downstream 1000 false chr1: 34889792-34890791 Medicago truncatula
Medtr1g078040 2.0kb upstream 2.0kb upstream 9767 true chr1: 34890792-34900558 Medicago truncatula
Medtr1g078040 2.0kb upstream 2.0kb upstream 2000 false chr1: 34898559-34900558 Medicago truncatula
Medtr1g078040 2.0kb downstream 2.0kb downstream 9767 true chr1: 34888792-34898558 Medicago truncatula
Medtr1g078040 2.0kb downstream 2.0kb downstream 2000 false chr1: 34888792-34890791 Medicago truncatula
Medtr1g078040 5.0kb upstream 5.0kb upstream 12767 true chr1: 34890792-34903558 Medicago truncatula
Medtr1g078040 5.0kb upstream 5.0kb upstream 5000 false chr1: 34898559-34903558 Medicago truncatula
Medtr1g078040 5.0kb downstream 5.0kb downstream 12767 true chr1: 34885792-34898558 Medicago truncatula
Medtr1g078040 5.0kb downstream 5.0kb downstream 5000 false chr1: 34885792-34890791 Medicago truncatula
Medtr1g078040 10.0kb upstream 10.0kb upstream 17767 true chr1: 34890792-34908558 Medicago truncatula
Medtr1g078040 10.0kb upstream 10.0kb upstream 10000 false chr1: 34898559-34908558 Medicago truncatula
Medtr1g078040 10.0kb downstream 10.0kb downstream 17767 true chr1: 34880792-34898558 Medicago truncatula
Medtr1g078040 10.0kb downstream 10.0kb downstream 10000 false chr1: 34880792-34890791 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307700 5265 Fabidae View MSA
124061864 5270 Rosid View MSA
123748776 5271 Pentapetalae View MSA
122797875 5272 Eudicot View MSA
122041710 5273 Angiosperm View MSA
121349617 5274 Embryophyte View MSA
123427472 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.67     High High
cufflinks 4.848        
cufflinks 5.287        
cufflinks 6.957        
cufflinks 5.105        
cufflinks 4.658        
cufflinks 13.157     High  
cufflinks 4.479        
cufflinks 13.506     High  

0 Strain