Gene : Medtr1g088375 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR10459//PTHR10459:SF59 - DNA LIGASE Description:  poly(ADP-ribose) polymerase domain protein
Genomic Order:  4868 Name:  ? Medtr1g088375
Secondary Identifier:  ? PAC:31095961
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g088375 0.5kb upstream 0.5kb upstream 9940 true chr1: 39502517-39512456 Medicago truncatula
Medtr1g088375 0.5kb upstream 0.5kb upstream 500 false chr1: 39502517-39503016 Medicago truncatula
Medtr1g088375 0.5kb downstream 0.5kb downstream 9940 true chr1: 39503017-39512956 Medicago truncatula
Medtr1g088375 0.5kb downstream 0.5kb downstream 500 false chr1: 39512457-39512956 Medicago truncatula
Medtr1g088375 1.0kb upstream 1.0kb upstream 10440 true chr1: 39502017-39512456 Medicago truncatula
Medtr1g088375 1.0kb upstream 1.0kb upstream 1000 false chr1: 39502017-39503016 Medicago truncatula
Medtr1g088375 1.0kb downstream 1.0kb downstream 10440 true chr1: 39503017-39513456 Medicago truncatula
Medtr1g088375 1.0kb downstream 1.0kb downstream 1000 false chr1: 39512457-39513456 Medicago truncatula
Medtr1g088375 2.0kb upstream 2.0kb upstream 11440 true chr1: 39501017-39512456 Medicago truncatula
Medtr1g088375 2.0kb upstream 2.0kb upstream 2000 false chr1: 39501017-39503016 Medicago truncatula
Medtr1g088375 2.0kb downstream 2.0kb downstream 11440 true chr1: 39503017-39514456 Medicago truncatula
Medtr1g088375 2.0kb downstream 2.0kb downstream 2000 false chr1: 39512457-39514456 Medicago truncatula
Medtr1g088375 5.0kb upstream 5.0kb upstream 14440 true chr1: 39498017-39512456 Medicago truncatula
Medtr1g088375 5.0kb upstream 5.0kb upstream 5000 false chr1: 39498017-39503016 Medicago truncatula
Medtr1g088375 5.0kb downstream 5.0kb downstream 14440 true chr1: 39503017-39517456 Medicago truncatula
Medtr1g088375 5.0kb downstream 5.0kb downstream 5000 false chr1: 39512457-39517456 Medicago truncatula
Medtr1g088375 10.0kb upstream 10.0kb upstream 19440 true chr1: 39493017-39512456 Medicago truncatula
Medtr1g088375 10.0kb upstream 10.0kb upstream 10000 false chr1: 39493017-39503016 Medicago truncatula
Medtr1g088375 10.0kb downstream 10.0kb downstream 19440 true chr1: 39503017-39522456 Medicago truncatula
Medtr1g088375 10.0kb downstream 10.0kb downstream 10000 false chr1: 39512457-39522456 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308517 5265 Fabidae View MSA
124074369 5270 Rosid View MSA
123750076 5271 Pentapetalae View MSA
122797319 5272 Eudicot View MSA
122051365 5273 Angiosperm View MSA
121345540 5274 Embryophyte View MSA
123380235 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.357        
cufflinks 0.999       High
cufflinks 0.271        
cufflinks 0.281        
cufflinks 0.367        
cufflinks 0.136     Low Low
cufflinks 0.589        
cufflinks 0.274        
cufflinks 1.798       High

0 Strain