Gene : Medtr1g087900 M. truncatula Mt4.0v1
Defline:  (1 of 1) 4.2.1.2 - Fumarate hydratase / Fumarase Description:  fumarate hydratase
Genomic Order:  4846 Name:  ? Medtr1g087900
Secondary Identifier:  ? PAC:31094608
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5464 Medicago truncatula pathologic  
Mtruncatula PWY-561 Medicago truncatula pathologic  
Mtruncatula PWY-5690 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g087900 0.5kb upstream 0.5kb upstream 7306 true chr1: 39346684-39353989 Medicago truncatula
Medtr1g087900 0.5kb upstream 0.5kb upstream 500 false chr1: 39346684-39347183 Medicago truncatula
Medtr1g087900 0.5kb downstream 0.5kb downstream 7306 true chr1: 39347184-39354489 Medicago truncatula
Medtr1g087900 0.5kb downstream 0.5kb downstream 500 false chr1: 39353990-39354489 Medicago truncatula
Medtr1g087900 1.0kb upstream 1.0kb upstream 7806 true chr1: 39346184-39353989 Medicago truncatula
Medtr1g087900 1.0kb upstream 1.0kb upstream 1000 false chr1: 39346184-39347183 Medicago truncatula
Medtr1g087900 1.0kb downstream 1.0kb downstream 7806 true chr1: 39347184-39354989 Medicago truncatula
Medtr1g087900 1.0kb downstream 1.0kb downstream 1000 false chr1: 39353990-39354989 Medicago truncatula
Medtr1g087900 2.0kb upstream 2.0kb upstream 8806 true chr1: 39345184-39353989 Medicago truncatula
Medtr1g087900 2.0kb upstream 2.0kb upstream 2000 false chr1: 39345184-39347183 Medicago truncatula
Medtr1g087900 2.0kb downstream 2.0kb downstream 8806 true chr1: 39347184-39355989 Medicago truncatula
Medtr1g087900 2.0kb downstream 2.0kb downstream 2000 false chr1: 39353990-39355989 Medicago truncatula
Medtr1g087900 5.0kb upstream 5.0kb upstream 11806 true chr1: 39342184-39353989 Medicago truncatula
Medtr1g087900 5.0kb upstream 5.0kb upstream 5000 false chr1: 39342184-39347183 Medicago truncatula
Medtr1g087900 5.0kb downstream 5.0kb downstream 11806 true chr1: 39347184-39358989 Medicago truncatula
Medtr1g087900 5.0kb downstream 5.0kb downstream 5000 false chr1: 39353990-39358989 Medicago truncatula
Medtr1g087900 10.0kb upstream 10.0kb upstream 16806 true chr1: 39337184-39353989 Medicago truncatula
Medtr1g087900 10.0kb upstream 10.0kb upstream 10000 false chr1: 39337184-39347183 Medicago truncatula
Medtr1g087900 10.0kb downstream 10.0kb downstream 16806 true chr1: 39347184-39363989 Medicago truncatula
Medtr1g087900 10.0kb downstream 10.0kb downstream 10000 false chr1: 39353990-39363989 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307847 5265 Fabidae View MSA
124069053 5270 Rosid View MSA
123742189 5271 Pentapetalae View MSA
122791396 5272 Eudicot View MSA
122047120 5273 Angiosperm View MSA
121349544 5274 Embryophyte View MSA
123423814 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.551     High  
cufflinks 11.156     High  
cufflinks 11.781     High  
cufflinks 10.978     High  
cufflinks 11.789     High  
cufflinks 3.973       Low
cufflinks 10.19     High  
cufflinks 11.932     High  
cufflinks 11.967     High  

0 Strain