Gene : Medtr1g087030 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR33921:SF2 - CALVIN CYCLE PROTEIN CP12-1, CHLOROPLASTIC-RELATED Description:  calvin cycle protein CP12-1
Genomic Order:  4795 Name:  ? Medtr1g087030
Secondary Identifier:  ? PAC:31093904
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g087030 0.5kb upstream 0.5kb upstream 1220 true chr1: 38958875-38960094 Medicago truncatula
Medtr1g087030 0.5kb upstream 0.5kb upstream 500 false chr1: 38958875-38959374 Medicago truncatula
Medtr1g087030 0.5kb downstream 0.5kb downstream 1220 true chr1: 38959375-38960594 Medicago truncatula
Medtr1g087030 0.5kb downstream 0.5kb downstream 500 false chr1: 38960095-38960594 Medicago truncatula
Medtr1g087030 1.0kb upstream 1.0kb upstream 1720 true chr1: 38958375-38960094 Medicago truncatula
Medtr1g087030 1.0kb upstream 1.0kb upstream 1000 false chr1: 38958375-38959374 Medicago truncatula
Medtr1g087030 1.0kb downstream 1.0kb downstream 1720 true chr1: 38959375-38961094 Medicago truncatula
Medtr1g087030 1.0kb downstream 1.0kb downstream 1000 false chr1: 38960095-38961094 Medicago truncatula
Medtr1g087030 2.0kb upstream 2.0kb upstream 2720 true chr1: 38957375-38960094 Medicago truncatula
Medtr1g087030 2.0kb upstream 2.0kb upstream 2000 false chr1: 38957375-38959374 Medicago truncatula
Medtr1g087030 2.0kb downstream 2.0kb downstream 2720 true chr1: 38959375-38962094 Medicago truncatula
Medtr1g087030 2.0kb downstream 2.0kb downstream 2000 false chr1: 38960095-38962094 Medicago truncatula
Medtr1g087030 5.0kb upstream 5.0kb upstream 5720 true chr1: 38954375-38960094 Medicago truncatula
Medtr1g087030 5.0kb upstream 5.0kb upstream 5000 false chr1: 38954375-38959374 Medicago truncatula
Medtr1g087030 5.0kb downstream 5.0kb downstream 5720 true chr1: 38959375-38965094 Medicago truncatula
Medtr1g087030 5.0kb downstream 5.0kb downstream 5000 false chr1: 38960095-38965094 Medicago truncatula
Medtr1g087030 10.0kb upstream 10.0kb upstream 10720 true chr1: 38949375-38960094 Medicago truncatula
Medtr1g087030 10.0kb upstream 10.0kb upstream 10000 false chr1: 38949375-38959374 Medicago truncatula
Medtr1g087030 10.0kb downstream 10.0kb downstream 10720 true chr1: 38959375-38970094 Medicago truncatula
Medtr1g087030 10.0kb downstream 10.0kb downstream 10000 false chr1: 38960095-38970094 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298035 5265 Fabidae View MSA
124070241 5270 Rosid View MSA
123742696 5271 Pentapetalae View MSA
122795504 5272 Eudicot View MSA
122046618 5273 Angiosperm View MSA
121351753 5274 Embryophyte View MSA
123424034 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.02     Low Low
cufflinks 107.783     High  
cufflinks 207.009     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 338.002     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.074       Low
cufflinks 132.885     High  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain