Gene : Medtr1g086940 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR10381:SF12 - ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 5, CHLOROPLASTIC Description:  ATP-dependent Clp protease proteolytic protein
Genomic Order:  4786 Name:  ? Medtr1g086940
Secondary Identifier:  ? PAC:31100635
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g086940 0.5kb upstream 0.5kb upstream 6467 true chr1: 38915094-38921560 Medicago truncatula
Medtr1g086940 0.5kb upstream 0.5kb upstream 500 false chr1: 38915094-38915593 Medicago truncatula
Medtr1g086940 0.5kb downstream 0.5kb downstream 6467 true chr1: 38915594-38922060 Medicago truncatula
Medtr1g086940 0.5kb downstream 0.5kb downstream 500 false chr1: 38921561-38922060 Medicago truncatula
Medtr1g086940 1.0kb upstream 1.0kb upstream 6967 true chr1: 38914594-38921560 Medicago truncatula
Medtr1g086940 1.0kb upstream 1.0kb upstream 1000 false chr1: 38914594-38915593 Medicago truncatula
Medtr1g086940 1.0kb downstream 1.0kb downstream 6967 true chr1: 38915594-38922560 Medicago truncatula
Medtr1g086940 1.0kb downstream 1.0kb downstream 1000 false chr1: 38921561-38922560 Medicago truncatula
Medtr1g086940 2.0kb upstream 2.0kb upstream 7967 true chr1: 38913594-38921560 Medicago truncatula
Medtr1g086940 2.0kb upstream 2.0kb upstream 2000 false chr1: 38913594-38915593 Medicago truncatula
Medtr1g086940 2.0kb downstream 2.0kb downstream 7967 true chr1: 38915594-38923560 Medicago truncatula
Medtr1g086940 2.0kb downstream 2.0kb downstream 2000 false chr1: 38921561-38923560 Medicago truncatula
Medtr1g086940 5.0kb upstream 5.0kb upstream 10967 true chr1: 38910594-38921560 Medicago truncatula
Medtr1g086940 5.0kb upstream 5.0kb upstream 5000 false chr1: 38910594-38915593 Medicago truncatula
Medtr1g086940 5.0kb downstream 5.0kb downstream 10967 true chr1: 38915594-38926560 Medicago truncatula
Medtr1g086940 5.0kb downstream 5.0kb downstream 5000 false chr1: 38921561-38926560 Medicago truncatula
Medtr1g086940 10.0kb upstream 10.0kb upstream 15967 true chr1: 38905594-38921560 Medicago truncatula
Medtr1g086940 10.0kb upstream 10.0kb upstream 10000 false chr1: 38905594-38915593 Medicago truncatula
Medtr1g086940 10.0kb downstream 10.0kb downstream 15967 true chr1: 38915594-38931560 Medicago truncatula
Medtr1g086940 10.0kb downstream 10.0kb downstream 10000 false chr1: 38921561-38931560 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308927 5265 Fabidae View MSA
124067501 5270 Rosid View MSA
123746339 5271 Pentapetalae View MSA
122771871 5272 Eudicot View MSA
122043333 5273 Angiosperm View MSA
121344238 5274 Embryophyte View MSA
123424888 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.142       Low
cufflinks 14.496     High  
cufflinks 16.936     High High
cufflinks 3.036        
cufflinks 21.192     High High
cufflinks 1.668        
cufflinks 1.838        
cufflinks 15.096     High  
cufflinks 3.005        

0 Strain