Gene : Medtr1g080860 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR31734:SF28 - AUXIN-RESPONSIVE PROTEIN IAA16 Description:  auxin-responsive AUX/IAA family protein
Genomic Order:  4405 Name:  ? Medtr1g080860
Secondary Identifier:  ? PAC:31092905
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g080860 0.5kb upstream 0.5kb upstream 4431 true chr1: 35973245-35977675 Medicago truncatula
Medtr1g080860 0.5kb upstream 0.5kb upstream 500 false chr1: 35977176-35977675 Medicago truncatula
Medtr1g080860 0.5kb downstream 0.5kb downstream 4431 true chr1: 35972745-35977175 Medicago truncatula
Medtr1g080860 0.5kb downstream 0.5kb downstream 500 false chr1: 35972745-35973244 Medicago truncatula
Medtr1g080860 1.0kb upstream 1.0kb upstream 4931 true chr1: 35973245-35978175 Medicago truncatula
Medtr1g080860 1.0kb upstream 1.0kb upstream 1000 false chr1: 35977176-35978175 Medicago truncatula
Medtr1g080860 1.0kb downstream 1.0kb downstream 4931 true chr1: 35972245-35977175 Medicago truncatula
Medtr1g080860 1.0kb downstream 1.0kb downstream 1000 false chr1: 35972245-35973244 Medicago truncatula
Medtr1g080860 2.0kb upstream 2.0kb upstream 5931 true chr1: 35973245-35979175 Medicago truncatula
Medtr1g080860 2.0kb upstream 2.0kb upstream 2000 false chr1: 35977176-35979175 Medicago truncatula
Medtr1g080860 2.0kb downstream 2.0kb downstream 5931 true chr1: 35971245-35977175 Medicago truncatula
Medtr1g080860 2.0kb downstream 2.0kb downstream 2000 false chr1: 35971245-35973244 Medicago truncatula
Medtr1g080860 5.0kb upstream 5.0kb upstream 8931 true chr1: 35973245-35982175 Medicago truncatula
Medtr1g080860 5.0kb upstream 5.0kb upstream 5000 false chr1: 35977176-35982175 Medicago truncatula
Medtr1g080860 5.0kb downstream 5.0kb downstream 8931 true chr1: 35968245-35977175 Medicago truncatula
Medtr1g080860 5.0kb downstream 5.0kb downstream 5000 false chr1: 35968245-35973244 Medicago truncatula
Medtr1g080860 10.0kb upstream 10.0kb upstream 13931 true chr1: 35973245-35987175 Medicago truncatula
Medtr1g080860 10.0kb upstream 10.0kb upstream 10000 false chr1: 35977176-35987175 Medicago truncatula
Medtr1g080860 10.0kb downstream 10.0kb downstream 13931 true chr1: 35963245-35977175 Medicago truncatula
Medtr1g080860 10.0kb downstream 10.0kb downstream 10000 false chr1: 35963245-35973244 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308156 5265 Fabidae View MSA
124071523 5270 Rosid View MSA
123744630 5271 Pentapetalae View MSA
122796049 5272 Eudicot View MSA
122042007 5273 Angiosperm View MSA
121309912 5274 Embryophyte View MSA
123347544 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.826     High Low
cufflinks 37.91     High  
cufflinks 31.333     High  
cufflinks 23.37     High  
cufflinks 36.234     High  
cufflinks 8.013       Low
cufflinks 29.725     High  
cufflinks 32.769     High  
cufflinks 21.204     High  

0 Strain