Gene : Medtr1g080500 M. truncatula Mt4.0v1
Defline:  (1 of 1) 4.1.1.21 - Phosphoribosylaminoimidazole carboxylase / AIR carboxylase Description:  phosphoribosylaminoimidazole carboxylase
Genomic Order:  4387 Name:  ? Medtr1g080500
Secondary Identifier:  ? PAC:31099346
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6124 Medicago truncatula pathologic  
Mtruncatula PWY-841 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g080500 0.5kb upstream 0.5kb upstream 6710 true chr1: 35851754-35858463 Medicago truncatula
Medtr1g080500 0.5kb upstream 0.5kb upstream 500 false chr1: 35857964-35858463 Medicago truncatula
Medtr1g080500 0.5kb downstream 0.5kb downstream 6710 true chr1: 35851254-35857963 Medicago truncatula
Medtr1g080500 0.5kb downstream 0.5kb downstream 500 false chr1: 35851254-35851753 Medicago truncatula
Medtr1g080500 1.0kb upstream 1.0kb upstream 7210 true chr1: 35851754-35858963 Medicago truncatula
Medtr1g080500 1.0kb upstream 1.0kb upstream 1000 false chr1: 35857964-35858963 Medicago truncatula
Medtr1g080500 1.0kb downstream 1.0kb downstream 7210 true chr1: 35850754-35857963 Medicago truncatula
Medtr1g080500 1.0kb downstream 1.0kb downstream 1000 false chr1: 35850754-35851753 Medicago truncatula
Medtr1g080500 2.0kb upstream 2.0kb upstream 8210 true chr1: 35851754-35859963 Medicago truncatula
Medtr1g080500 2.0kb upstream 2.0kb upstream 2000 false chr1: 35857964-35859963 Medicago truncatula
Medtr1g080500 2.0kb downstream 2.0kb downstream 8210 true chr1: 35849754-35857963 Medicago truncatula
Medtr1g080500 2.0kb downstream 2.0kb downstream 2000 false chr1: 35849754-35851753 Medicago truncatula
Medtr1g080500 5.0kb upstream 5.0kb upstream 11210 true chr1: 35851754-35862963 Medicago truncatula
Medtr1g080500 5.0kb upstream 5.0kb upstream 5000 false chr1: 35857964-35862963 Medicago truncatula
Medtr1g080500 5.0kb downstream 5.0kb downstream 11210 true chr1: 35846754-35857963 Medicago truncatula
Medtr1g080500 5.0kb downstream 5.0kb downstream 5000 false chr1: 35846754-35851753 Medicago truncatula
Medtr1g080500 10.0kb upstream 10.0kb upstream 16210 true chr1: 35851754-35867963 Medicago truncatula
Medtr1g080500 10.0kb upstream 10.0kb upstream 10000 false chr1: 35857964-35867963 Medicago truncatula
Medtr1g080500 10.0kb downstream 10.0kb downstream 16210 true chr1: 35841754-35857963 Medicago truncatula
Medtr1g080500 10.0kb downstream 10.0kb downstream 10000 false chr1: 35841754-35851753 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308610 5265 Fabidae View MSA
124064893 5270 Rosid View MSA
123748384 5271 Pentapetalae View MSA
122790389 5272 Eudicot View MSA
122043847 5273 Angiosperm View MSA
121345366 5274 Embryophyte View MSA
123425127 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.159        
cufflinks 1.434        
cufflinks 1.587        
cufflinks 0.586        
cufflinks 3.329       High
cufflinks 0.164       Low
cufflinks 1.721        
cufflinks 1.099        
cufflinks 1.666        

0 Strain