Gene : Medtr1g082300 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR13268:SF2 - AUTOPHAGY-RELATED PROTEIN 18G Description:  breast carcinoma amplified sequence 3 protein
Genomic Order:  4472 Name:  ? Medtr1g082300
Secondary Identifier:  ? PAC:31100598
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g082300 0.5kb upstream 0.5kb upstream 8790 true chr1: 36587909-36596698 Medicago truncatula
Medtr1g082300 0.5kb upstream 0.5kb upstream 500 false chr1: 36596199-36596698 Medicago truncatula
Medtr1g082300 0.5kb downstream 0.5kb downstream 8790 true chr1: 36587409-36596198 Medicago truncatula
Medtr1g082300 0.5kb downstream 0.5kb downstream 500 false chr1: 36587409-36587908 Medicago truncatula
Medtr1g082300 1.0kb upstream 1.0kb upstream 9290 true chr1: 36587909-36597198 Medicago truncatula
Medtr1g082300 1.0kb upstream 1.0kb upstream 1000 false chr1: 36596199-36597198 Medicago truncatula
Medtr1g082300 1.0kb downstream 1.0kb downstream 9290 true chr1: 36586909-36596198 Medicago truncatula
Medtr1g082300 1.0kb downstream 1.0kb downstream 1000 false chr1: 36586909-36587908 Medicago truncatula
Medtr1g082300 2.0kb upstream 2.0kb upstream 10290 true chr1: 36587909-36598198 Medicago truncatula
Medtr1g082300 2.0kb upstream 2.0kb upstream 2000 false chr1: 36596199-36598198 Medicago truncatula
Medtr1g082300 2.0kb downstream 2.0kb downstream 10290 true chr1: 36585909-36596198 Medicago truncatula
Medtr1g082300 2.0kb downstream 2.0kb downstream 2000 false chr1: 36585909-36587908 Medicago truncatula
Medtr1g082300 5.0kb upstream 5.0kb upstream 13290 true chr1: 36587909-36601198 Medicago truncatula
Medtr1g082300 5.0kb upstream 5.0kb upstream 5000 false chr1: 36596199-36601198 Medicago truncatula
Medtr1g082300 5.0kb downstream 5.0kb downstream 13290 true chr1: 36582909-36596198 Medicago truncatula
Medtr1g082300 5.0kb downstream 5.0kb downstream 5000 false chr1: 36582909-36587908 Medicago truncatula
Medtr1g082300 10.0kb upstream 10.0kb upstream 18290 true chr1: 36587909-36606198 Medicago truncatula
Medtr1g082300 10.0kb upstream 10.0kb upstream 10000 false chr1: 36596199-36606198 Medicago truncatula
Medtr1g082300 10.0kb downstream 10.0kb downstream 18290 true chr1: 36577909-36596198 Medicago truncatula
Medtr1g082300 10.0kb downstream 10.0kb downstream 10000 false chr1: 36577909-36587908 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303531 5265 Fabidae View MSA
124063703 5270 Rosid View MSA
123744735 5271 Pentapetalae View MSA
122790134 5272 Eudicot View MSA
122047922 5273 Angiosperm View MSA
121350059 5274 Embryophyte View MSA
123424091 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.45       High
cufflinks 2.408        
cufflinks 3.27        
cufflinks 2.246        
cufflinks 1.845       Low
cufflinks 2.54        
cufflinks 5.05       High
cufflinks 2.798        
cufflinks 3.38        

0 Strain