Gene : Medtr1g083910 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR14152 - SQUAMOUS CELL CARCINOMA ANTIGEN RECOGNISED BY CYTOTOXIC T LYMPHOCYTES Description:  SART-1 family protein
Genomic Order:  4592 Name:  ? Medtr1g083910
Secondary Identifier:  ? PAC:31098969
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g083910 0.5kb upstream 0.5kb upstream 13057 true chr1: 37370606-37383662 Medicago truncatula
Medtr1g083910 0.5kb upstream 0.5kb upstream 500 false chr1: 37383163-37383662 Medicago truncatula
Medtr1g083910 0.5kb downstream 0.5kb downstream 13057 true chr1: 37370106-37383162 Medicago truncatula
Medtr1g083910 0.5kb downstream 0.5kb downstream 500 false chr1: 37370106-37370605 Medicago truncatula
Medtr1g083910 1.0kb upstream 1.0kb upstream 13557 true chr1: 37370606-37384162 Medicago truncatula
Medtr1g083910 1.0kb upstream 1.0kb upstream 1000 false chr1: 37383163-37384162 Medicago truncatula
Medtr1g083910 1.0kb downstream 1.0kb downstream 13557 true chr1: 37369606-37383162 Medicago truncatula
Medtr1g083910 1.0kb downstream 1.0kb downstream 1000 false chr1: 37369606-37370605 Medicago truncatula
Medtr1g083910 2.0kb upstream 2.0kb upstream 14557 true chr1: 37370606-37385162 Medicago truncatula
Medtr1g083910 2.0kb upstream 2.0kb upstream 2000 false chr1: 37383163-37385162 Medicago truncatula
Medtr1g083910 2.0kb downstream 2.0kb downstream 14557 true chr1: 37368606-37383162 Medicago truncatula
Medtr1g083910 2.0kb downstream 2.0kb downstream 2000 false chr1: 37368606-37370605 Medicago truncatula
Medtr1g083910 5.0kb upstream 5.0kb upstream 17557 true chr1: 37370606-37388162 Medicago truncatula
Medtr1g083910 5.0kb upstream 5.0kb upstream 5000 false chr1: 37383163-37388162 Medicago truncatula
Medtr1g083910 5.0kb downstream 5.0kb downstream 17557 true chr1: 37365606-37383162 Medicago truncatula
Medtr1g083910 5.0kb downstream 5.0kb downstream 5000 false chr1: 37365606-37370605 Medicago truncatula
Medtr1g083910 10.0kb upstream 10.0kb upstream 22557 true chr1: 37370606-37393162 Medicago truncatula
Medtr1g083910 10.0kb upstream 10.0kb upstream 10000 false chr1: 37383163-37393162 Medicago truncatula
Medtr1g083910 10.0kb downstream 10.0kb downstream 22557 true chr1: 37360606-37383162 Medicago truncatula
Medtr1g083910 10.0kb downstream 10.0kb downstream 10000 false chr1: 37360606-37370605 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309710 5265 Fabidae View MSA
124062674 5270 Rosid View MSA
123746922 5271 Pentapetalae View MSA
122786640 5272 Eudicot View MSA
122041665 5273 Angiosperm View MSA
121345433 5274 Embryophyte View MSA
123424851 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.395       High
cufflinks 4.281        
cufflinks 5.478        
cufflinks 1.938       Low
cufflinks 4.289        
cufflinks 1.914       Low
cufflinks 3.539        
cufflinks 4.654        
cufflinks 1.938       Low

0 Strain