Gene : Medtr1g083890 M. truncatula Mt4.0v1
Defline:  (1 of 47) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Description:  PPR containing plant-like protein
Genomic Order:  4590 Name:  ? Medtr1g083890
Secondary Identifier:  ? PAC:31096671
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g083890 0.5kb upstream 0.5kb upstream 2654 true chr1: 37365101-37367754 Medicago truncatula
Medtr1g083890 0.5kb upstream 0.5kb upstream 500 false chr1: 37365101-37365600 Medicago truncatula
Medtr1g083890 0.5kb downstream 0.5kb downstream 2654 true chr1: 37365601-37368254 Medicago truncatula
Medtr1g083890 0.5kb downstream 0.5kb downstream 500 false chr1: 37367755-37368254 Medicago truncatula
Medtr1g083890 1.0kb upstream 1.0kb upstream 3154 true chr1: 37364601-37367754 Medicago truncatula
Medtr1g083890 1.0kb upstream 1.0kb upstream 1000 false chr1: 37364601-37365600 Medicago truncatula
Medtr1g083890 1.0kb downstream 1.0kb downstream 3154 true chr1: 37365601-37368754 Medicago truncatula
Medtr1g083890 1.0kb downstream 1.0kb downstream 1000 false chr1: 37367755-37368754 Medicago truncatula
Medtr1g083890 2.0kb upstream 2.0kb upstream 4154 true chr1: 37363601-37367754 Medicago truncatula
Medtr1g083890 2.0kb upstream 2.0kb upstream 2000 false chr1: 37363601-37365600 Medicago truncatula
Medtr1g083890 2.0kb downstream 2.0kb downstream 4154 true chr1: 37365601-37369754 Medicago truncatula
Medtr1g083890 2.0kb downstream 2.0kb downstream 2000 false chr1: 37367755-37369754 Medicago truncatula
Medtr1g083890 5.0kb upstream 5.0kb upstream 7154 true chr1: 37360601-37367754 Medicago truncatula
Medtr1g083890 5.0kb upstream 5.0kb upstream 5000 false chr1: 37360601-37365600 Medicago truncatula
Medtr1g083890 5.0kb downstream 5.0kb downstream 7154 true chr1: 37365601-37372754 Medicago truncatula
Medtr1g083890 5.0kb downstream 5.0kb downstream 5000 false chr1: 37367755-37372754 Medicago truncatula
Medtr1g083890 10.0kb upstream 10.0kb upstream 12154 true chr1: 37355601-37367754 Medicago truncatula
Medtr1g083890 10.0kb upstream 10.0kb upstream 10000 false chr1: 37355601-37365600 Medicago truncatula
Medtr1g083890 10.0kb downstream 10.0kb downstream 12154 true chr1: 37365601-37377754 Medicago truncatula
Medtr1g083890 10.0kb downstream 10.0kb downstream 10000 false chr1: 37367755-37377754 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304577 5265 Fabidae View MSA
124072342 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.328       Low
cufflinks 0.379        
cufflinks 0.558        
cufflinks 0.34        
cufflinks 1.024       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.473        
cufflinks 0.476        
cufflinks 0.698        

0 Strain