Gene : Medtr1g085500 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR31238:SF39 - GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 1-RELATED Description:  rhicadhesin receptor
Genomic Order:  4698 Name:  ? Medtr1g085500
Secondary Identifier:  ? PAC:31093162
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g085500 0.5kb upstream 0.5kb upstream 2387 true chr1: 38183900-38186286 Medicago truncatula
Medtr1g085500 0.5kb upstream 0.5kb upstream 500 false chr1: 38185787-38186286 Medicago truncatula
Medtr1g085500 0.5kb downstream 0.5kb downstream 2387 true chr1: 38183400-38185786 Medicago truncatula
Medtr1g085500 0.5kb downstream 0.5kb downstream 500 false chr1: 38183400-38183899 Medicago truncatula
Medtr1g085500 1.0kb upstream 1.0kb upstream 2887 true chr1: 38183900-38186786 Medicago truncatula
Medtr1g085500 1.0kb upstream 1.0kb upstream 1000 false chr1: 38185787-38186786 Medicago truncatula
Medtr1g085500 1.0kb downstream 1.0kb downstream 2887 true chr1: 38182900-38185786 Medicago truncatula
Medtr1g085500 1.0kb downstream 1.0kb downstream 1000 false chr1: 38182900-38183899 Medicago truncatula
Medtr1g085500 2.0kb upstream 2.0kb upstream 3887 true chr1: 38183900-38187786 Medicago truncatula
Medtr1g085500 2.0kb upstream 2.0kb upstream 2000 false chr1: 38185787-38187786 Medicago truncatula
Medtr1g085500 2.0kb downstream 2.0kb downstream 3887 true chr1: 38181900-38185786 Medicago truncatula
Medtr1g085500 2.0kb downstream 2.0kb downstream 2000 false chr1: 38181900-38183899 Medicago truncatula
Medtr1g085500 5.0kb upstream 5.0kb upstream 6887 true chr1: 38183900-38190786 Medicago truncatula
Medtr1g085500 5.0kb upstream 5.0kb upstream 5000 false chr1: 38185787-38190786 Medicago truncatula
Medtr1g085500 5.0kb downstream 5.0kb downstream 6887 true chr1: 38178900-38185786 Medicago truncatula
Medtr1g085500 5.0kb downstream 5.0kb downstream 5000 false chr1: 38178900-38183899 Medicago truncatula
Medtr1g085500 10.0kb upstream 10.0kb upstream 11887 true chr1: 38183900-38195786 Medicago truncatula
Medtr1g085500 10.0kb upstream 10.0kb upstream 10000 false chr1: 38185787-38195786 Medicago truncatula
Medtr1g085500 10.0kb downstream 10.0kb downstream 11887 true chr1: 38173900-38185786 Medicago truncatula
Medtr1g085500 10.0kb downstream 10.0kb downstream 10000 false chr1: 38173900-38183899 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041466 5273 Angiosperm View MSA
122308579 5265 Fabidae View MSA
124073822 5270 Rosid View MSA
123750442 5271 Pentapetalae View MSA
122795274 5272 Eudicot View MSA
121349986 5274 Embryophyte View MSA
123427618 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.096       Low
cufflinks 2.995        
cufflinks 0.811        
cufflinks 0.881        
cufflinks 2.717        
cufflinks 0.058     Low Low
cufflinks 2.33        
cufflinks 1.24        
cufflinks 4.679       High

0 Strain