Gene : Medtr1g085280 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR24015:SF562 - PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Description:  ribosomal protein L15
Genomic Order:  4679 Name:  ? Medtr1g085280
Secondary Identifier:  ? PAC:31093881
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g085280 0.5kb upstream 0.5kb upstream 1887 true chr1: 38065736-38067622 Medicago truncatula
Medtr1g085280 0.5kb upstream 0.5kb upstream 500 false chr1: 38067123-38067622 Medicago truncatula
Medtr1g085280 0.5kb downstream 0.5kb downstream 1887 true chr1: 38065236-38067122 Medicago truncatula
Medtr1g085280 0.5kb downstream 0.5kb downstream 500 false chr1: 38065236-38065735 Medicago truncatula
Medtr1g085280 1.0kb upstream 1.0kb upstream 2387 true chr1: 38065736-38068122 Medicago truncatula
Medtr1g085280 1.0kb upstream 1.0kb upstream 1000 false chr1: 38067123-38068122 Medicago truncatula
Medtr1g085280 1.0kb downstream 1.0kb downstream 2387 true chr1: 38064736-38067122 Medicago truncatula
Medtr1g085280 1.0kb downstream 1.0kb downstream 1000 false chr1: 38064736-38065735 Medicago truncatula
Medtr1g085280 2.0kb upstream 2.0kb upstream 3387 true chr1: 38065736-38069122 Medicago truncatula
Medtr1g085280 2.0kb upstream 2.0kb upstream 2000 false chr1: 38067123-38069122 Medicago truncatula
Medtr1g085280 2.0kb downstream 2.0kb downstream 3387 true chr1: 38063736-38067122 Medicago truncatula
Medtr1g085280 2.0kb downstream 2.0kb downstream 2000 false chr1: 38063736-38065735 Medicago truncatula
Medtr1g085280 5.0kb upstream 5.0kb upstream 6387 true chr1: 38065736-38072122 Medicago truncatula
Medtr1g085280 5.0kb upstream 5.0kb upstream 5000 false chr1: 38067123-38072122 Medicago truncatula
Medtr1g085280 5.0kb downstream 5.0kb downstream 6387 true chr1: 38060736-38067122 Medicago truncatula
Medtr1g085280 5.0kb downstream 5.0kb downstream 5000 false chr1: 38060736-38065735 Medicago truncatula
Medtr1g085280 10.0kb upstream 10.0kb upstream 11387 true chr1: 38065736-38077122 Medicago truncatula
Medtr1g085280 10.0kb upstream 10.0kb upstream 10000 false chr1: 38067123-38077122 Medicago truncatula
Medtr1g085280 10.0kb downstream 10.0kb downstream 11387 true chr1: 38055736-38067122 Medicago truncatula
Medtr1g085280 10.0kb downstream 10.0kb downstream 10000 false chr1: 38055736-38065735 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306292 5265 Fabidae View MSA
124062138 5270 Rosid View MSA
123738772 5271 Pentapetalae View MSA
122795104 5272 Eudicot View MSA
122042665 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121309997 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.773       High
cufflinks 0.292       Low
cufflinks 0.444        
cufflinks 1.196        
cufflinks 0.928        
cufflinks 0.396        
cufflinks 1.292        
cufflinks 0.345       Low
cufflinks 1.926       High

0 Strain