Gene : Medtr1g086390 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR31375:SF43 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Description:  polygalacturonase/glycoside hydrolase family protein
Genomic Order:  4754 Name:  ? Medtr1g086390
Secondary Identifier:  ? PAC:31095711
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1081 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g086390 0.5kb upstream 0.5kb upstream 3630 true chr1: 38659265-38662894 Medicago truncatula
Medtr1g086390 0.5kb upstream 0.5kb upstream 500 false chr1: 38659265-38659764 Medicago truncatula
Medtr1g086390 0.5kb downstream 0.5kb downstream 3630 true chr1: 38659765-38663394 Medicago truncatula
Medtr1g086390 0.5kb downstream 0.5kb downstream 500 false chr1: 38662895-38663394 Medicago truncatula
Medtr1g086390 1.0kb upstream 1.0kb upstream 4130 true chr1: 38658765-38662894 Medicago truncatula
Medtr1g086390 1.0kb upstream 1.0kb upstream 1000 false chr1: 38658765-38659764 Medicago truncatula
Medtr1g086390 1.0kb downstream 1.0kb downstream 4130 true chr1: 38659765-38663894 Medicago truncatula
Medtr1g086390 1.0kb downstream 1.0kb downstream 1000 false chr1: 38662895-38663894 Medicago truncatula
Medtr1g086390 2.0kb upstream 2.0kb upstream 5130 true chr1: 38657765-38662894 Medicago truncatula
Medtr1g086390 2.0kb upstream 2.0kb upstream 2000 false chr1: 38657765-38659764 Medicago truncatula
Medtr1g086390 2.0kb downstream 2.0kb downstream 5130 true chr1: 38659765-38664894 Medicago truncatula
Medtr1g086390 2.0kb downstream 2.0kb downstream 2000 false chr1: 38662895-38664894 Medicago truncatula
Medtr1g086390 5.0kb upstream 5.0kb upstream 8130 true chr1: 38654765-38662894 Medicago truncatula
Medtr1g086390 5.0kb upstream 5.0kb upstream 5000 false chr1: 38654765-38659764 Medicago truncatula
Medtr1g086390 5.0kb downstream 5.0kb downstream 8130 true chr1: 38659765-38667894 Medicago truncatula
Medtr1g086390 5.0kb downstream 5.0kb downstream 5000 false chr1: 38662895-38667894 Medicago truncatula
Medtr1g086390 10.0kb upstream 10.0kb upstream 13130 true chr1: 38649765-38662894 Medicago truncatula
Medtr1g086390 10.0kb upstream 10.0kb upstream 10000 false chr1: 38649765-38659764 Medicago truncatula
Medtr1g086390 10.0kb downstream 10.0kb downstream 13130 true chr1: 38659765-38672894 Medicago truncatula
Medtr1g086390 10.0kb downstream 10.0kb downstream 10000 false chr1: 38662895-38672894 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312422 5265 Fabidae View MSA
124066514 5270 Rosid View MSA
123746353 5271 Pentapetalae View MSA
122791695 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.2        
cufflinks 0.145        
cufflinks 0.043     Low Low
cufflinks 0.243        
cufflinks 0.219        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.372        
cufflinks 0.028     Low Low
cufflinks 0.467       High

0 Strain