Gene : Medtr1g086380 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR33149:SF4 - PHOTOSYSTEM Q(B) PROTEIN Description:  photosystem II Q(B) protein
Genomic Order:  4753 Name:  ? Medtr1g086380
Secondary Identifier:  ? PAC:31097756
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PHOTOALL-PWY Medicago truncatula pathologic  
Mtruncatula PWY-101 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g086380 0.5kb upstream 0.5kb upstream 1454 true chr1: 38650356-38651809 Medicago truncatula
Medtr1g086380 0.5kb upstream 0.5kb upstream 500 false chr1: 38651310-38651809 Medicago truncatula
Medtr1g086380 0.5kb downstream 0.5kb downstream 1454 true chr1: 38649856-38651309 Medicago truncatula
Medtr1g086380 0.5kb downstream 0.5kb downstream 500 false chr1: 38649856-38650355 Medicago truncatula
Medtr1g086380 1.0kb upstream 1.0kb upstream 1954 true chr1: 38650356-38652309 Medicago truncatula
Medtr1g086380 1.0kb upstream 1.0kb upstream 1000 false chr1: 38651310-38652309 Medicago truncatula
Medtr1g086380 1.0kb downstream 1.0kb downstream 1954 true chr1: 38649356-38651309 Medicago truncatula
Medtr1g086380 1.0kb downstream 1.0kb downstream 1000 false chr1: 38649356-38650355 Medicago truncatula
Medtr1g086380 2.0kb upstream 2.0kb upstream 2954 true chr1: 38650356-38653309 Medicago truncatula
Medtr1g086380 2.0kb upstream 2.0kb upstream 2000 false chr1: 38651310-38653309 Medicago truncatula
Medtr1g086380 2.0kb downstream 2.0kb downstream 2954 true chr1: 38648356-38651309 Medicago truncatula
Medtr1g086380 2.0kb downstream 2.0kb downstream 2000 false chr1: 38648356-38650355 Medicago truncatula
Medtr1g086380 5.0kb upstream 5.0kb upstream 5954 true chr1: 38650356-38656309 Medicago truncatula
Medtr1g086380 5.0kb upstream 5.0kb upstream 5000 false chr1: 38651310-38656309 Medicago truncatula
Medtr1g086380 5.0kb downstream 5.0kb downstream 5954 true chr1: 38645356-38651309 Medicago truncatula
Medtr1g086380 5.0kb downstream 5.0kb downstream 5000 false chr1: 38645356-38650355 Medicago truncatula
Medtr1g086380 10.0kb upstream 10.0kb upstream 10954 true chr1: 38650356-38661309 Medicago truncatula
Medtr1g086380 10.0kb upstream 10.0kb upstream 10000 false chr1: 38651310-38661309 Medicago truncatula
Medtr1g086380 10.0kb downstream 10.0kb downstream 10954 true chr1: 38640356-38651309 Medicago truncatula
Medtr1g086380 10.0kb downstream 10.0kb downstream 10000 false chr1: 38640356-38650355 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298849 5265 Fabidae View MSA
124042149 5270 Rosid View MSA
123753555 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.012     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain