Gene : Medtr1g066940 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR11254:SF350 - E3 UBIQUITIN-PROTEIN LIGASE UPL4 Description:  E3 ubiquitin-protein ligase
Genomic Order:  3468 Name:  ? Medtr1g066940
Secondary Identifier:  ? PAC:31092780
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7511 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g066940 0.5kb upstream 0.5kb upstream 10906 true chr1: 28771167-28782072 Medicago truncatula
Medtr1g066940 0.5kb upstream 0.5kb upstream 500 false chr1: 28781573-28782072 Medicago truncatula
Medtr1g066940 0.5kb downstream 0.5kb downstream 10906 true chr1: 28770667-28781572 Medicago truncatula
Medtr1g066940 0.5kb downstream 0.5kb downstream 500 false chr1: 28770667-28771166 Medicago truncatula
Medtr1g066940 1.0kb upstream 1.0kb upstream 11406 true chr1: 28771167-28782572 Medicago truncatula
Medtr1g066940 1.0kb upstream 1.0kb upstream 1000 false chr1: 28781573-28782572 Medicago truncatula
Medtr1g066940 1.0kb downstream 1.0kb downstream 11406 true chr1: 28770167-28781572 Medicago truncatula
Medtr1g066940 1.0kb downstream 1.0kb downstream 1000 false chr1: 28770167-28771166 Medicago truncatula
Medtr1g066940 2.0kb upstream 2.0kb upstream 12406 true chr1: 28771167-28783572 Medicago truncatula
Medtr1g066940 2.0kb upstream 2.0kb upstream 2000 false chr1: 28781573-28783572 Medicago truncatula
Medtr1g066940 2.0kb downstream 2.0kb downstream 12406 true chr1: 28769167-28781572 Medicago truncatula
Medtr1g066940 2.0kb downstream 2.0kb downstream 2000 false chr1: 28769167-28771166 Medicago truncatula
Medtr1g066940 5.0kb upstream 5.0kb upstream 15406 true chr1: 28771167-28786572 Medicago truncatula
Medtr1g066940 5.0kb upstream 5.0kb upstream 5000 false chr1: 28781573-28786572 Medicago truncatula
Medtr1g066940 5.0kb downstream 5.0kb downstream 15406 true chr1: 28766167-28781572 Medicago truncatula
Medtr1g066940 5.0kb downstream 5.0kb downstream 5000 false chr1: 28766167-28771166 Medicago truncatula
Medtr1g066940 10.0kb upstream 10.0kb upstream 20406 true chr1: 28771167-28791572 Medicago truncatula
Medtr1g066940 10.0kb upstream 10.0kb upstream 10000 false chr1: 28781573-28791572 Medicago truncatula
Medtr1g066940 10.0kb downstream 10.0kb downstream 20406 true chr1: 28761167-28781572 Medicago truncatula
Medtr1g066940 10.0kb downstream 10.0kb downstream 10000 false chr1: 28761167-28771166 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301785 5265 Fabidae View MSA
124066546 5270 Rosid View MSA
123736938 5271 Pentapetalae View MSA
122796953 5272 Eudicot View MSA
122044351 5273 Angiosperm View MSA
121310283 5274 Embryophyte View MSA
123428406 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.32       High
cufflinks 0.79        
cufflinks 1.371       High
cufflinks 0.307       Low
cufflinks 0.859        
cufflinks 0.421       Low
cufflinks 0.796        
cufflinks 0.96        
cufflinks 0.7        

0 Strain