Gene : Medtr1g079770 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR14190 - SUPPRESSOR OF ACTIN MUTATIONS 2/VACUOLAR PROTEIN SORTING 52 Description:  vacuolar protein sorting-associated protein
Genomic Order:  4335 Name:  ? Medtr1g079770
Secondary Identifier:  ? PAC:31100228
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g079770 0.5kb upstream 0.5kb upstream 11185 true chr1: 35430818-35442002 Medicago truncatula
Medtr1g079770 0.5kb upstream 0.5kb upstream 500 false chr1: 35430818-35431317 Medicago truncatula
Medtr1g079770 0.5kb downstream 0.5kb downstream 11185 true chr1: 35431318-35442502 Medicago truncatula
Medtr1g079770 0.5kb downstream 0.5kb downstream 500 false chr1: 35442003-35442502 Medicago truncatula
Medtr1g079770 1.0kb upstream 1.0kb upstream 11685 true chr1: 35430318-35442002 Medicago truncatula
Medtr1g079770 1.0kb upstream 1.0kb upstream 1000 false chr1: 35430318-35431317 Medicago truncatula
Medtr1g079770 1.0kb downstream 1.0kb downstream 11685 true chr1: 35431318-35443002 Medicago truncatula
Medtr1g079770 1.0kb downstream 1.0kb downstream 1000 false chr1: 35442003-35443002 Medicago truncatula
Medtr1g079770 2.0kb upstream 2.0kb upstream 12685 true chr1: 35429318-35442002 Medicago truncatula
Medtr1g079770 2.0kb upstream 2.0kb upstream 2000 false chr1: 35429318-35431317 Medicago truncatula
Medtr1g079770 2.0kb downstream 2.0kb downstream 12685 true chr1: 35431318-35444002 Medicago truncatula
Medtr1g079770 2.0kb downstream 2.0kb downstream 2000 false chr1: 35442003-35444002 Medicago truncatula
Medtr1g079770 5.0kb upstream 5.0kb upstream 15685 true chr1: 35426318-35442002 Medicago truncatula
Medtr1g079770 5.0kb upstream 5.0kb upstream 5000 false chr1: 35426318-35431317 Medicago truncatula
Medtr1g079770 5.0kb downstream 5.0kb downstream 15685 true chr1: 35431318-35447002 Medicago truncatula
Medtr1g079770 5.0kb downstream 5.0kb downstream 5000 false chr1: 35442003-35447002 Medicago truncatula
Medtr1g079770 10.0kb upstream 10.0kb upstream 20685 true chr1: 35421318-35442002 Medicago truncatula
Medtr1g079770 10.0kb upstream 10.0kb upstream 10000 false chr1: 35421318-35431317 Medicago truncatula
Medtr1g079770 10.0kb downstream 10.0kb downstream 20685 true chr1: 35431318-35452002 Medicago truncatula
Medtr1g079770 10.0kb downstream 10.0kb downstream 10000 false chr1: 35442003-35452002 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305451 5265 Fabidae View MSA
124065275 5270 Rosid View MSA
123738224 5271 Pentapetalae View MSA
122792330 5272 Eudicot View MSA
122043794 5273 Angiosperm View MSA
121345189 5274 Embryophyte View MSA
123425999 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.719        
cufflinks 2.328        
cufflinks 3.031       High
cufflinks 0.41       Low
cufflinks 2.632        
cufflinks 0.389       Low
cufflinks 1.145        
cufflinks 2.647        
cufflinks 0.818        

0 Strain