Gene : Medtr1g080390 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR24012:SF411 - EXPRESSED PROTEIN Description:  RNA-binding (RRM/RBD/RNP motif) family protein
Genomic Order:  4373 Name:  ? Medtr1g080390
Secondary Identifier:  ? PAC:31097145
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g080390 0.5kb upstream 0.5kb upstream 9852 true chr1: 35708690-35718541 Medicago truncatula
Medtr1g080390 0.5kb upstream 0.5kb upstream 500 false chr1: 35718042-35718541 Medicago truncatula
Medtr1g080390 0.5kb downstream 0.5kb downstream 9852 true chr1: 35708190-35718041 Medicago truncatula
Medtr1g080390 0.5kb downstream 0.5kb downstream 500 false chr1: 35708190-35708689 Medicago truncatula
Medtr1g080390 1.0kb upstream 1.0kb upstream 10352 true chr1: 35708690-35719041 Medicago truncatula
Medtr1g080390 1.0kb upstream 1.0kb upstream 1000 false chr1: 35718042-35719041 Medicago truncatula
Medtr1g080390 1.0kb downstream 1.0kb downstream 10352 true chr1: 35707690-35718041 Medicago truncatula
Medtr1g080390 1.0kb downstream 1.0kb downstream 1000 false chr1: 35707690-35708689 Medicago truncatula
Medtr1g080390 2.0kb upstream 2.0kb upstream 11352 true chr1: 35708690-35720041 Medicago truncatula
Medtr1g080390 2.0kb upstream 2.0kb upstream 2000 false chr1: 35718042-35720041 Medicago truncatula
Medtr1g080390 2.0kb downstream 2.0kb downstream 11352 true chr1: 35706690-35718041 Medicago truncatula
Medtr1g080390 2.0kb downstream 2.0kb downstream 2000 false chr1: 35706690-35708689 Medicago truncatula
Medtr1g080390 5.0kb upstream 5.0kb upstream 14352 true chr1: 35708690-35723041 Medicago truncatula
Medtr1g080390 5.0kb upstream 5.0kb upstream 5000 false chr1: 35718042-35723041 Medicago truncatula
Medtr1g080390 5.0kb downstream 5.0kb downstream 14352 true chr1: 35703690-35718041 Medicago truncatula
Medtr1g080390 5.0kb downstream 5.0kb downstream 5000 false chr1: 35703690-35708689 Medicago truncatula
Medtr1g080390 10.0kb upstream 10.0kb upstream 19352 true chr1: 35708690-35728041 Medicago truncatula
Medtr1g080390 10.0kb upstream 10.0kb upstream 10000 false chr1: 35718042-35728041 Medicago truncatula
Medtr1g080390 10.0kb downstream 10.0kb downstream 19352 true chr1: 35698690-35718041 Medicago truncatula
Medtr1g080390 10.0kb downstream 10.0kb downstream 10000 false chr1: 35698690-35708689 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312131 5265 Fabidae View MSA
124062654 5270 Rosid View MSA
123744051 5271 Pentapetalae View MSA
122793233 5272 Eudicot View MSA
122049270 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349565 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.285        
cufflinks 2.747        
cufflinks 3.371        
cufflinks 0.905       Low
cufflinks 4.806       High
cufflinks 0.616       Low
cufflinks 1.934        
cufflinks 3.062        
cufflinks 1.361        

0 Strain