Gene : Medtr1g080210 M. truncatula Mt4.0v1
Defline:  (1 of 15) PF04852 - Protein of unknown function (DUF640) (DUF640) Description:  light-dependent short hypocotyls protein
Genomic Order:  4362 Name:  ? Medtr1g080210
Secondary Identifier:  ? PAC:31098557
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g080210 0.5kb upstream 0.5kb upstream 2378 true chr1: 35607322-35609699 Medicago truncatula
Medtr1g080210 0.5kb upstream 0.5kb upstream 500 false chr1: 35607322-35607821 Medicago truncatula
Medtr1g080210 0.5kb downstream 0.5kb downstream 2378 true chr1: 35607822-35610199 Medicago truncatula
Medtr1g080210 0.5kb downstream 0.5kb downstream 500 false chr1: 35609700-35610199 Medicago truncatula
Medtr1g080210 1.0kb upstream 1.0kb upstream 2878 true chr1: 35606822-35609699 Medicago truncatula
Medtr1g080210 1.0kb upstream 1.0kb upstream 1000 false chr1: 35606822-35607821 Medicago truncatula
Medtr1g080210 1.0kb downstream 1.0kb downstream 2878 true chr1: 35607822-35610699 Medicago truncatula
Medtr1g080210 1.0kb downstream 1.0kb downstream 1000 false chr1: 35609700-35610699 Medicago truncatula
Medtr1g080210 2.0kb upstream 2.0kb upstream 3878 true chr1: 35605822-35609699 Medicago truncatula
Medtr1g080210 2.0kb upstream 2.0kb upstream 2000 false chr1: 35605822-35607821 Medicago truncatula
Medtr1g080210 2.0kb downstream 2.0kb downstream 3878 true chr1: 35607822-35611699 Medicago truncatula
Medtr1g080210 2.0kb downstream 2.0kb downstream 2000 false chr1: 35609700-35611699 Medicago truncatula
Medtr1g080210 5.0kb upstream 5.0kb upstream 6878 true chr1: 35602822-35609699 Medicago truncatula
Medtr1g080210 5.0kb upstream 5.0kb upstream 5000 false chr1: 35602822-35607821 Medicago truncatula
Medtr1g080210 5.0kb downstream 5.0kb downstream 6878 true chr1: 35607822-35614699 Medicago truncatula
Medtr1g080210 5.0kb downstream 5.0kb downstream 5000 false chr1: 35609700-35614699 Medicago truncatula
Medtr1g080210 10.0kb upstream 10.0kb upstream 11878 true chr1: 35597822-35609699 Medicago truncatula
Medtr1g080210 10.0kb upstream 10.0kb upstream 10000 false chr1: 35597822-35607821 Medicago truncatula
Medtr1g080210 10.0kb downstream 10.0kb downstream 11878 true chr1: 35607822-35619699 Medicago truncatula
Medtr1g080210 10.0kb downstream 10.0kb downstream 10000 false chr1: 35609700-35619699 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307412 5265 Fabidae View MSA
124063298 5270 Rosid View MSA
123753170 5271 Pentapetalae View MSA
122789282 5272 Eudicot View MSA
122049887 5273 Angiosperm View MSA
121351474 5274 Embryophyte View MSA
123382179 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.03     Low Low
cufflinks 0.429        
cufflinks 0.217        
cufflinks 0.963       High
cufflinks 0.511        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.113        
cufflinks 0.197        
cufflinks 0.154        

0 Strain