Gene : Medtr1g107480 M. truncatula Mt4.0v1
Defline:  (1 of 3) 1.1.1.95 - Phosphoglycerate dehydrogenase / Phosphoglyceric acid dehydrogenase Description:  D-3-phosphoglycerate dehydrogenase family protein
Genomic Order:  6135 Name:  ? Medtr1g107480
Secondary Identifier:  ? PAC:31099938
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula SER-GLYSYN-PWY Medicago truncatula pathologic  
Mtruncatula SERSYN-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g107480 0.5kb upstream 0.5kb upstream 4011 true chr1: 48783515-48787525 Medicago truncatula
Medtr1g107480 0.5kb upstream 0.5kb upstream 500 false chr1: 48783515-48784014 Medicago truncatula
Medtr1g107480 0.5kb downstream 0.5kb downstream 4011 true chr1: 48784015-48788025 Medicago truncatula
Medtr1g107480 0.5kb downstream 0.5kb downstream 500 false chr1: 48787526-48788025 Medicago truncatula
Medtr1g107480 1.0kb upstream 1.0kb upstream 4511 true chr1: 48783015-48787525 Medicago truncatula
Medtr1g107480 1.0kb upstream 1.0kb upstream 1000 false chr1: 48783015-48784014 Medicago truncatula
Medtr1g107480 1.0kb downstream 1.0kb downstream 4511 true chr1: 48784015-48788525 Medicago truncatula
Medtr1g107480 1.0kb downstream 1.0kb downstream 1000 false chr1: 48787526-48788525 Medicago truncatula
Medtr1g107480 2.0kb upstream 2.0kb upstream 5511 true chr1: 48782015-48787525 Medicago truncatula
Medtr1g107480 2.0kb upstream 2.0kb upstream 2000 false chr1: 48782015-48784014 Medicago truncatula
Medtr1g107480 2.0kb downstream 2.0kb downstream 5511 true chr1: 48784015-48789525 Medicago truncatula
Medtr1g107480 2.0kb downstream 2.0kb downstream 2000 false chr1: 48787526-48789525 Medicago truncatula
Medtr1g107480 5.0kb upstream 5.0kb upstream 8511 true chr1: 48779015-48787525 Medicago truncatula
Medtr1g107480 5.0kb upstream 5.0kb upstream 5000 false chr1: 48779015-48784014 Medicago truncatula
Medtr1g107480 5.0kb downstream 5.0kb downstream 8511 true chr1: 48784015-48792525 Medicago truncatula
Medtr1g107480 5.0kb downstream 5.0kb downstream 5000 false chr1: 48787526-48792525 Medicago truncatula
Medtr1g107480 10.0kb upstream 10.0kb upstream 13511 true chr1: 48774015-48787525 Medicago truncatula
Medtr1g107480 10.0kb upstream 10.0kb upstream 10000 false chr1: 48774015-48784014 Medicago truncatula
Medtr1g107480 10.0kb downstream 10.0kb downstream 13511 true chr1: 48784015-48797525 Medicago truncatula
Medtr1g107480 10.0kb downstream 10.0kb downstream 10000 false chr1: 48787526-48797525 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305922 5265 Fabidae View MSA
124071894 5270 Rosid View MSA
123750282 5271 Pentapetalae View MSA
122795023 5272 Eudicot View MSA
122044765 5273 Angiosperm View MSA
121347094 5274 Embryophyte View MSA
123427510 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.567     High  
cufflinks 7.812        
cufflinks 4.955       Low
cufflinks 40.523     High High
cufflinks 13.878     High  
cufflinks 8.363        
cufflinks 13.98     High  
cufflinks 5.166       Low
cufflinks 35.74     High High

0 Strain