Gene : Medtr1g108650 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF16669 - Tetratricopeptide repeat protein 5 OB fold domain (TTC5_OB) Description:  TPR repeat protein
Genomic Order:  6180 Name:  ? Medtr1g108650
Secondary Identifier:  ? PAC:31100549
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g108650 0.5kb upstream 0.5kb upstream 7546 true chr1: 49100193-49107738 Medicago truncatula
Medtr1g108650 0.5kb upstream 0.5kb upstream 500 false chr1: 49100193-49100692 Medicago truncatula
Medtr1g108650 0.5kb downstream 0.5kb downstream 7546 true chr1: 49100693-49108238 Medicago truncatula
Medtr1g108650 0.5kb downstream 0.5kb downstream 500 false chr1: 49107739-49108238 Medicago truncatula
Medtr1g108650 1.0kb upstream 1.0kb upstream 8046 true chr1: 49099693-49107738 Medicago truncatula
Medtr1g108650 1.0kb upstream 1.0kb upstream 1000 false chr1: 49099693-49100692 Medicago truncatula
Medtr1g108650 1.0kb downstream 1.0kb downstream 8046 true chr1: 49100693-49108738 Medicago truncatula
Medtr1g108650 1.0kb downstream 1.0kb downstream 1000 false chr1: 49107739-49108738 Medicago truncatula
Medtr1g108650 2.0kb upstream 2.0kb upstream 9046 true chr1: 49098693-49107738 Medicago truncatula
Medtr1g108650 2.0kb upstream 2.0kb upstream 2000 false chr1: 49098693-49100692 Medicago truncatula
Medtr1g108650 2.0kb downstream 2.0kb downstream 9046 true chr1: 49100693-49109738 Medicago truncatula
Medtr1g108650 2.0kb downstream 2.0kb downstream 2000 false chr1: 49107739-49109738 Medicago truncatula
Medtr1g108650 5.0kb upstream 5.0kb upstream 12046 true chr1: 49095693-49107738 Medicago truncatula
Medtr1g108650 5.0kb upstream 5.0kb upstream 5000 false chr1: 49095693-49100692 Medicago truncatula
Medtr1g108650 5.0kb downstream 5.0kb downstream 12046 true chr1: 49100693-49112738 Medicago truncatula
Medtr1g108650 5.0kb downstream 5.0kb downstream 5000 false chr1: 49107739-49112738 Medicago truncatula
Medtr1g108650 10.0kb upstream 10.0kb upstream 17046 true chr1: 49090693-49107738 Medicago truncatula
Medtr1g108650 10.0kb upstream 10.0kb upstream 10000 false chr1: 49090693-49100692 Medicago truncatula
Medtr1g108650 10.0kb downstream 10.0kb downstream 17046 true chr1: 49100693-49117738 Medicago truncatula
Medtr1g108650 10.0kb downstream 10.0kb downstream 10000 false chr1: 49107739-49117738 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305603 5265 Fabidae View MSA
124069629 5270 Rosid View MSA
123742575 5271 Pentapetalae View MSA
122794271 5272 Eudicot View MSA
122048209 5273 Angiosperm View MSA
121349212 5274 Embryophyte View MSA
123425821 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.877        
cufflinks 2.982        
cufflinks 3.519        
cufflinks 0.645       Low
cufflinks 2.979        
cufflinks 0.545       Low
cufflinks 2.371        
cufflinks 2.699        
cufflinks 2.007        

0 Strain