Gene : Medtr1g108270 M. truncatula Mt4.0v1
Defline:  (1 of 19) PF13041//PF13812 - PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Description:  PPR containing plant-like protein
Genomic Order:  6154 Name:  ? Medtr1g108270
Secondary Identifier:  ? PAC:31095254
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g108270 0.5kb upstream 0.5kb upstream 2529 true chr1: 48924799-48927327 Medicago truncatula
Medtr1g108270 0.5kb upstream 0.5kb upstream 500 false chr1: 48926828-48927327 Medicago truncatula
Medtr1g108270 0.5kb downstream 0.5kb downstream 2529 true chr1: 48924299-48926827 Medicago truncatula
Medtr1g108270 0.5kb downstream 0.5kb downstream 500 false chr1: 48924299-48924798 Medicago truncatula
Medtr1g108270 1.0kb upstream 1.0kb upstream 3029 true chr1: 48924799-48927827 Medicago truncatula
Medtr1g108270 1.0kb upstream 1.0kb upstream 1000 false chr1: 48926828-48927827 Medicago truncatula
Medtr1g108270 1.0kb downstream 1.0kb downstream 3029 true chr1: 48923799-48926827 Medicago truncatula
Medtr1g108270 1.0kb downstream 1.0kb downstream 1000 false chr1: 48923799-48924798 Medicago truncatula
Medtr1g108270 2.0kb upstream 2.0kb upstream 4029 true chr1: 48924799-48928827 Medicago truncatula
Medtr1g108270 2.0kb upstream 2.0kb upstream 2000 false chr1: 48926828-48928827 Medicago truncatula
Medtr1g108270 2.0kb downstream 2.0kb downstream 4029 true chr1: 48922799-48926827 Medicago truncatula
Medtr1g108270 2.0kb downstream 2.0kb downstream 2000 false chr1: 48922799-48924798 Medicago truncatula
Medtr1g108270 5.0kb upstream 5.0kb upstream 7029 true chr1: 48924799-48931827 Medicago truncatula
Medtr1g108270 5.0kb upstream 5.0kb upstream 5000 false chr1: 48926828-48931827 Medicago truncatula
Medtr1g108270 5.0kb downstream 5.0kb downstream 7029 true chr1: 48919799-48926827 Medicago truncatula
Medtr1g108270 5.0kb downstream 5.0kb downstream 5000 false chr1: 48919799-48924798 Medicago truncatula
Medtr1g108270 10.0kb upstream 10.0kb upstream 12029 true chr1: 48924799-48936827 Medicago truncatula
Medtr1g108270 10.0kb upstream 10.0kb upstream 10000 false chr1: 48926828-48936827 Medicago truncatula
Medtr1g108270 10.0kb downstream 10.0kb downstream 12029 true chr1: 48914799-48926827 Medicago truncatula
Medtr1g108270 10.0kb downstream 10.0kb downstream 10000 false chr1: 48914799-48924798 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300887 5265 Fabidae View MSA
124063313 5270 Rosid View MSA
123738652 5271 Pentapetalae View MSA
122793005 5272 Eudicot View MSA
122045173 5273 Angiosperm View MSA
121310410 5274 Embryophyte View MSA
123347900 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.762        
cufflinks 0.68        
cufflinks 0.741        
cufflinks 0.311       Low
cufflinks 1.552       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.506        
cufflinks 0.605        
cufflinks 0.572        

0 Strain