Gene : Medtr1g109400 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR10165:SF80 - LIPID PHOSPHATE PHOSPHATASE 1-RELATED Description:  lipid phosphate phosphatase-like protein
Genomic Order:  6228 Name:  ? Medtr1g109400
Secondary Identifier:  ? PAC:31094135
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula TRIGLSYN-PWY Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g109400 0.5kb upstream 0.5kb upstream 2998 true chr1: 49473148-49476145 Medicago truncatula
Medtr1g109400 0.5kb upstream 0.5kb upstream 500 false chr1: 49475646-49476145 Medicago truncatula
Medtr1g109400 0.5kb downstream 0.5kb downstream 2998 true chr1: 49472648-49475645 Medicago truncatula
Medtr1g109400 0.5kb downstream 0.5kb downstream 500 false chr1: 49472648-49473147 Medicago truncatula
Medtr1g109400 1.0kb upstream 1.0kb upstream 3498 true chr1: 49473148-49476645 Medicago truncatula
Medtr1g109400 1.0kb upstream 1.0kb upstream 1000 false chr1: 49475646-49476645 Medicago truncatula
Medtr1g109400 1.0kb downstream 1.0kb downstream 3498 true chr1: 49472148-49475645 Medicago truncatula
Medtr1g109400 1.0kb downstream 1.0kb downstream 1000 false chr1: 49472148-49473147 Medicago truncatula
Medtr1g109400 2.0kb upstream 2.0kb upstream 4498 true chr1: 49473148-49477645 Medicago truncatula
Medtr1g109400 2.0kb upstream 2.0kb upstream 2000 false chr1: 49475646-49477645 Medicago truncatula
Medtr1g109400 2.0kb downstream 2.0kb downstream 4498 true chr1: 49471148-49475645 Medicago truncatula
Medtr1g109400 2.0kb downstream 2.0kb downstream 2000 false chr1: 49471148-49473147 Medicago truncatula
Medtr1g109400 5.0kb upstream 5.0kb upstream 7498 true chr1: 49473148-49480645 Medicago truncatula
Medtr1g109400 5.0kb upstream 5.0kb upstream 5000 false chr1: 49475646-49480645 Medicago truncatula
Medtr1g109400 5.0kb downstream 5.0kb downstream 7498 true chr1: 49468148-49475645 Medicago truncatula
Medtr1g109400 5.0kb downstream 5.0kb downstream 5000 false chr1: 49468148-49473147 Medicago truncatula
Medtr1g109400 10.0kb upstream 10.0kb upstream 12498 true chr1: 49473148-49485645 Medicago truncatula
Medtr1g109400 10.0kb upstream 10.0kb upstream 10000 false chr1: 49475646-49485645 Medicago truncatula
Medtr1g109400 10.0kb downstream 10.0kb downstream 12498 true chr1: 49463148-49475645 Medicago truncatula
Medtr1g109400 10.0kb downstream 10.0kb downstream 10000 false chr1: 49463148-49473147 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306885 5265 Fabidae View MSA
124064865 5270 Rosid View MSA
123740840 5271 Pentapetalae View MSA
122793689 5272 Eudicot View MSA
122042575 5273 Angiosperm View MSA
121350600 5274 Embryophyte View MSA
123428329 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.722       High
cufflinks 2.749       Low
cufflinks 3.655        
cufflinks 6.942        
cufflinks 2.777        
cufflinks 4.703        
cufflinks 6.69        
cufflinks 2.314       Low
cufflinks 8.501       High

0 Strain