Gene : Medtr1g111090 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR10621//PTHR10621:SF12 - UV EXCISION REPAIR PROTEIN RAD23 Description:  RAD23 UV excision repair family protein
Genomic Order:  6317 Name:  ? Medtr1g111090
Secondary Identifier:  ? PAC:31099882
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g111090 0.5kb upstream 0.5kb upstream 5013 true chr1: 50170974-50175986 Medicago truncatula
Medtr1g111090 0.5kb upstream 0.5kb upstream 500 false chr1: 50170974-50171473 Medicago truncatula
Medtr1g111090 0.5kb downstream 0.5kb downstream 5013 true chr1: 50171474-50176486 Medicago truncatula
Medtr1g111090 0.5kb downstream 0.5kb downstream 500 false chr1: 50175987-50176486 Medicago truncatula
Medtr1g111090 1.0kb upstream 1.0kb upstream 5513 true chr1: 50170474-50175986 Medicago truncatula
Medtr1g111090 1.0kb upstream 1.0kb upstream 1000 false chr1: 50170474-50171473 Medicago truncatula
Medtr1g111090 1.0kb downstream 1.0kb downstream 5513 true chr1: 50171474-50176986 Medicago truncatula
Medtr1g111090 1.0kb downstream 1.0kb downstream 1000 false chr1: 50175987-50176986 Medicago truncatula
Medtr1g111090 2.0kb upstream 2.0kb upstream 6513 true chr1: 50169474-50175986 Medicago truncatula
Medtr1g111090 2.0kb upstream 2.0kb upstream 2000 false chr1: 50169474-50171473 Medicago truncatula
Medtr1g111090 2.0kb downstream 2.0kb downstream 6513 true chr1: 50171474-50177986 Medicago truncatula
Medtr1g111090 2.0kb downstream 2.0kb downstream 2000 false chr1: 50175987-50177986 Medicago truncatula
Medtr1g111090 5.0kb upstream 5.0kb upstream 9513 true chr1: 50166474-50175986 Medicago truncatula
Medtr1g111090 5.0kb upstream 5.0kb upstream 5000 false chr1: 50166474-50171473 Medicago truncatula
Medtr1g111090 5.0kb downstream 5.0kb downstream 9513 true chr1: 50171474-50180986 Medicago truncatula
Medtr1g111090 5.0kb downstream 5.0kb downstream 5000 false chr1: 50175987-50180986 Medicago truncatula
Medtr1g111090 10.0kb upstream 10.0kb upstream 14513 true chr1: 50161474-50175986 Medicago truncatula
Medtr1g111090 10.0kb upstream 10.0kb upstream 10000 false chr1: 50161474-50171473 Medicago truncatula
Medtr1g111090 10.0kb downstream 10.0kb downstream 14513 true chr1: 50171474-50185986 Medicago truncatula
Medtr1g111090 10.0kb downstream 10.0kb downstream 10000 false chr1: 50175987-50185986 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040911 5273 Angiosperm View MSA
122309404 5265 Fabidae View MSA
124061978 5270 Rosid View MSA
123736504 5271 Pentapetalae View MSA
122787573 5272 Eudicot View MSA
121350140 5274 Embryophyte View MSA
123423951 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.156     High  
cufflinks 25.885     High  
cufflinks 35.223     High  
cufflinks 97.022     High High
cufflinks 22.098     High Low
cufflinks 56.832     High  
cufflinks 25.303     High  
cufflinks 29.966     High  
cufflinks 41.295     High  

0 Strain