Gene : Medtr1g101620 M. truncatula Mt4.0v1
Defline:  (1 of 2) 6.1.1.9 - Valine--tRNA ligase / Valyl-tRNA synthetase Description:  valyl-tRNA synthetase/valine-tRNA ligase
Genomic Order:  5708 Name:  ? Medtr1g101620
Secondary Identifier:  ? PAC:31100808
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula TRNA-CHARGING-PWY Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g101620 0.5kb upstream 0.5kb upstream 9855 true chr1: 45890846-45900700 Medicago truncatula
Medtr1g101620 0.5kb upstream 0.5kb upstream 500 false chr1: 45900201-45900700 Medicago truncatula
Medtr1g101620 0.5kb downstream 0.5kb downstream 9855 true chr1: 45890346-45900200 Medicago truncatula
Medtr1g101620 0.5kb downstream 0.5kb downstream 500 false chr1: 45890346-45890845 Medicago truncatula
Medtr1g101620 1.0kb upstream 1.0kb upstream 10355 true chr1: 45890846-45901200 Medicago truncatula
Medtr1g101620 1.0kb upstream 1.0kb upstream 1000 false chr1: 45900201-45901200 Medicago truncatula
Medtr1g101620 1.0kb downstream 1.0kb downstream 10355 true chr1: 45889846-45900200 Medicago truncatula
Medtr1g101620 1.0kb downstream 1.0kb downstream 1000 false chr1: 45889846-45890845 Medicago truncatula
Medtr1g101620 2.0kb upstream 2.0kb upstream 11355 true chr1: 45890846-45902200 Medicago truncatula
Medtr1g101620 2.0kb upstream 2.0kb upstream 2000 false chr1: 45900201-45902200 Medicago truncatula
Medtr1g101620 2.0kb downstream 2.0kb downstream 11355 true chr1: 45888846-45900200 Medicago truncatula
Medtr1g101620 2.0kb downstream 2.0kb downstream 2000 false chr1: 45888846-45890845 Medicago truncatula
Medtr1g101620 5.0kb upstream 5.0kb upstream 14355 true chr1: 45890846-45905200 Medicago truncatula
Medtr1g101620 5.0kb upstream 5.0kb upstream 5000 false chr1: 45900201-45905200 Medicago truncatula
Medtr1g101620 5.0kb downstream 5.0kb downstream 14355 true chr1: 45885846-45900200 Medicago truncatula
Medtr1g101620 5.0kb downstream 5.0kb downstream 5000 false chr1: 45885846-45890845 Medicago truncatula
Medtr1g101620 10.0kb upstream 10.0kb upstream 19355 true chr1: 45890846-45910200 Medicago truncatula
Medtr1g101620 10.0kb upstream 10.0kb upstream 10000 false chr1: 45900201-45910200 Medicago truncatula
Medtr1g101620 10.0kb downstream 10.0kb downstream 19355 true chr1: 45880846-45900200 Medicago truncatula
Medtr1g101620 10.0kb downstream 10.0kb downstream 10000 false chr1: 45880846-45890845 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307765 5265 Fabidae View MSA
124066992 5270 Rosid View MSA
123752070 5271 Pentapetalae View MSA
122788218 5272 Eudicot View MSA
122045228 5273 Angiosperm View MSA
121348805 5274 Embryophyte View MSA
123424302 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.965        
cufflinks 3.839        
cufflinks 3.733        
cufflinks 1.882       Low
cufflinks 5.91       High
cufflinks 1.134       Low
cufflinks 3.34        
cufflinks 4.361        
cufflinks 3.464        

0 Strain