Gene : Medtr1g094870 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR21049 - RIBOPHORIN I Description:  ribophorin I family protein
Genomic Order:  5289 Name:  ? Medtr1g094870
Secondary Identifier:  ? PAC:31100760
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g094870 0.5kb upstream 0.5kb upstream 7140 true chr1: 42668014-42675153 Medicago truncatula
Medtr1g094870 0.5kb upstream 0.5kb upstream 500 false chr1: 42668014-42668513 Medicago truncatula
Medtr1g094870 0.5kb downstream 0.5kb downstream 7140 true chr1: 42668514-42675653 Medicago truncatula
Medtr1g094870 0.5kb downstream 0.5kb downstream 500 false chr1: 42675154-42675653 Medicago truncatula
Medtr1g094870 1.0kb upstream 1.0kb upstream 7640 true chr1: 42667514-42675153 Medicago truncatula
Medtr1g094870 1.0kb upstream 1.0kb upstream 1000 false chr1: 42667514-42668513 Medicago truncatula
Medtr1g094870 1.0kb downstream 1.0kb downstream 7640 true chr1: 42668514-42676153 Medicago truncatula
Medtr1g094870 1.0kb downstream 1.0kb downstream 1000 false chr1: 42675154-42676153 Medicago truncatula
Medtr1g094870 2.0kb upstream 2.0kb upstream 8640 true chr1: 42666514-42675153 Medicago truncatula
Medtr1g094870 2.0kb upstream 2.0kb upstream 2000 false chr1: 42666514-42668513 Medicago truncatula
Medtr1g094870 2.0kb downstream 2.0kb downstream 8640 true chr1: 42668514-42677153 Medicago truncatula
Medtr1g094870 2.0kb downstream 2.0kb downstream 2000 false chr1: 42675154-42677153 Medicago truncatula
Medtr1g094870 5.0kb upstream 5.0kb upstream 11640 true chr1: 42663514-42675153 Medicago truncatula
Medtr1g094870 5.0kb upstream 5.0kb upstream 5000 false chr1: 42663514-42668513 Medicago truncatula
Medtr1g094870 5.0kb downstream 5.0kb downstream 11640 true chr1: 42668514-42680153 Medicago truncatula
Medtr1g094870 5.0kb downstream 5.0kb downstream 5000 false chr1: 42675154-42680153 Medicago truncatula
Medtr1g094870 10.0kb upstream 10.0kb upstream 16640 true chr1: 42658514-42675153 Medicago truncatula
Medtr1g094870 10.0kb upstream 10.0kb upstream 10000 false chr1: 42658514-42668513 Medicago truncatula
Medtr1g094870 10.0kb downstream 10.0kb downstream 16640 true chr1: 42668514-42685153 Medicago truncatula
Medtr1g094870 10.0kb downstream 10.0kb downstream 10000 false chr1: 42675154-42685153 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303975 5265 Fabidae View MSA
124062432 5270 Rosid View MSA
123739832 5271 Pentapetalae View MSA
122788147 5272 Eudicot View MSA
122045839 5273 Angiosperm View MSA
121344517 5274 Embryophyte View MSA
123425585 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.497       Low
cufflinks 13.438     High High
cufflinks 6.125        
cufflinks 6.342        
cufflinks 9.704        
cufflinks 4.105       Low
cufflinks 5.836        
cufflinks 8.632        
cufflinks 7.772        

0 Strain